Alternatives and similar repositories for kage

Users that are interested in kage are comparing it to the libraries listed below

• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated 2 weeks ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆43Updated last month
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆59Updated this week
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆48Updated 5 months ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated 2 weeks ago
• mcfrith / tandem-genotypes
  ☆48Updated last year
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆68Updated last month
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆42Updated 6 months ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆39Updated 2 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• kjenike / panagram
  ☆63Updated 2 weeks ago
• farhangus / Sniffles2_plot
  ☆31Updated 11 months ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆37Updated last year
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• shilpagarg / DipAsm
  ☆77Updated 5 years ago
• maickrau / ribotin
  ☆36Updated 2 weeks ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated last week
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆31Updated 4 years ago
• ablab / VerityMap
  ☆36Updated 2 years ago
• mrvollger / NucFreq
  ☆37Updated last year
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆40Updated 3 weeks ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆22Updated 3 years ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆30Updated 3 months ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆28Updated last year
• WGLab / LongReadSum
  ☆23Updated last week
• hitbc / gcSV
  ☆21Updated 5 months ago