Alternatives and similar repositories for kage:

Users that are interested in kage are comparing it to the libraries listed below

• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆31Updated last month
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 3 years ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆33Updated 3 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last month
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 4 months ago
• stat-lab / MOPline
  Detection and genotyping of structural variants
  ☆18Updated 2 weeks ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆64Updated 2 months ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆56Updated last week
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆35Updated 7 months ago
• farhangus / Sniffles2_plot
  ☆28Updated 6 months ago
• vgteam / giraffe-sv-paper
  ☆42Updated 9 months ago
• caaswxb / SRY
  SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.
  ☆18Updated last year
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• ablab / VerityMap
  ☆34Updated 2 years ago
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆39Updated 3 weeks ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆39Updated 2 months ago
• mcfrith / tandem-genotypes
  ☆48Updated 7 months ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated last year
• maickrau / ribotin
  ☆32Updated this week
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆38Updated 2 months ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 3 months ago
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 3 years ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆40Updated 3 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆50Updated 2 years ago
• epi2me-labs / wf-pore-c
  ☆37Updated last week