kage-genotyper / kage
Alignment-free genotyper for SNPs and short indels, implemented in Python.
☆48Updated 3 months ago
Alternatives and similar repositories for kage:
Users that are interested in kage are comparing it to the libraries listed below
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆76Updated 4 years ago
- Variant annotation and merging pipeline☆31Updated last week
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated last year
- A program for assessing the T2T genome continuity☆62Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 2 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 3 weeks ago
- ☆27Updated 5 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- perSVade: personalized Structural Variation detection☆38Updated last month
- TGS scaffolding☆46Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆30Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆70Updated last month
- ☆36Updated 4 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆79Updated 8 months ago
- ☆34Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ☆74Updated 3 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆21Updated 6 months ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆28Updated last month
- ☆48Updated 6 months ago
- ☆31Updated last month
- ☆42Updated 8 months ago
- Detection and genotyping of structural variants☆18Updated 2 months ago