Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.
☆14Aug 25, 2025Updated 6 months ago
Alternatives and similar repositories for parakit
Users that are interested in parakit are comparing it to the libraries listed below
Sorting:
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Multiple sequence alignment of long tandem repeats☆25Jan 9, 2026Updated last month
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆38Updated this week
- ☆23Sep 9, 2025Updated 5 months ago
- ☆38Oct 6, 2025Updated 4 months ago
- Evaluating genome assemblies☆115Jan 11, 2026Updated last month
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- ☆13Apr 18, 2022Updated 3 years ago
- Targeted genotyper for complex polymorphic genes☆36Feb 24, 2026Updated last week
- SV calling for diploid assemblies☆31Mar 22, 2024Updated last year
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated last month
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆12May 9, 2025Updated 9 months ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated 2 weeks ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 10 months ago
- General purpose utility related to GAF files☆29Jan 27, 2026Updated last month
- Telomere-to-Telomere diploid Indian Genome☆14Feb 11, 2026Updated 2 weeks ago
- ☆14Oct 17, 2024Updated last year
- This repo is designed as a step-by-step tutorial to teach RNA-seq analysis☆16Dec 21, 2025Updated 2 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Apr 9, 2022Updated 3 years ago
- ☆15Oct 10, 2023Updated 2 years ago
- ☆12May 6, 2022Updated 3 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated this week
- Genome Assembly 102☆17Apr 23, 2025Updated 10 months ago
- As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.☆12Jul 30, 2020Updated 5 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- ☆38Jan 14, 2026Updated last month
- ☆62Sep 15, 2025Updated 5 months ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Nov 14, 2025Updated 3 months ago
- Tandem repeat genotyping from long reads☆20Feb 24, 2026Updated last week
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Apr 28, 2025Updated 10 months ago
- VNTR annotation using motif selection☆39Feb 23, 2026Updated last week
- ☆18May 10, 2023Updated 2 years ago
- ☆38Dec 29, 2025Updated 2 months ago