cmdcolin / graphgenomeviewer
Web based viewer for small to medium GFA format files, similar to Bandage
☆11Updated 2 weeks ago
Alternatives and similar repositories for graphgenomeviewer:
Users that are interested in graphgenomeviewer are comparing it to the libraries listed below
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 7 months ago
- ☆14Updated 10 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 2 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- PGR-TK: Pangenome Research Tool Kit☆12Updated last week
- Genome assembly soft-masking using Red (REpeat Detector)☆16Updated 6 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Kmer Analysis of Pileups for Genotyping☆21Updated 2 weeks ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 8 months ago
- Targeted genotyper for complex polymorphic genes☆19Updated last week
- Improved Phased Assembler☆28Updated 2 years ago
- Jupyter Notebooks Using PGR-TK for various human pangenome analysis tasks☆14Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 8 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Genome Assembly 102☆14Updated last month
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆36Updated 2 weeks ago
- Extracting paths from assembly graphs☆22Updated 10 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- ☆30Updated 5 years ago
- ☆21Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 4 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 5 months ago
- ☆22Updated 6 months ago
- FastK based version of Merqury☆22Updated 2 weeks ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 3 months ago
- convert variation graph alignments to coverage maps over nodes☆23Updated last month