Alternatives and similar repositories for graphgenomeviewer

Users that are interested in graphgenomeviewer are comparing it to the libraries listed below

• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 4 months ago
• AdamCicherski / AlfaPang
  AlfaPang builds pangenome graphs without alignments or references.
  ☆12Updated 3 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 3 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 5 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 3 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆40Updated 11 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆45Updated 2 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆16Updated 2 weeks ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆28Updated last week
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆23Updated last week
• codeatcg / VRPG
  an interactive visualization and interpretation framework of reference-projected pangenome graphs
  ☆37Updated 7 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆37Updated last year
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 10 months ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆19Updated 3 weeks ago
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆35Updated 3 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆48Updated 4 years ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆28Updated last week
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated 2 months ago
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆35Updated 10 months ago
• MoinSebi / gfa2bin
  ☆25Updated last month
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆13Updated 3 years ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated 10 months ago