Alternatives and similar repositories for pantree

Users that are interested in pantree are comparing it to the libraries listed below

• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 2 months ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆40Updated 9 months ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆28Updated last year
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆45Updated 8 months ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆13Updated 2 years ago
• Sendrowski / fastDFE
  Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…
  ☆17Updated last month
• mrvollger / NucFreq
  ☆37Updated last year
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• davidebolo1993 / cosigt
  ☆21Updated this week
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆32Updated last year
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆28Updated 2 months ago
• nadegeguiglielmoni / GraphUnzip
  Unzip assembly graphs with Hi-C data and/or long reads.
  ☆28Updated 11 months ago
• MoinSebi / gfa2bin
  ☆25Updated 3 weeks ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆20Updated 3 months ago
• tangerzhang / calc_switchErr
  ☆27Updated 4 months ago
• maickrau / ribotin
  ☆36Updated last month
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated 2 years ago
• baozg / phased-assembly-check
  ☆30Updated 7 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆32Updated 7 months ago
• mrvollger / SafFire
  ☆30Updated 3 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆31Updated 4 years ago
• MoritzBlumer / winpca
  WinPCA. A package for windowed principal component analysis.
  ☆32Updated last month
• GTPB / CPANG22
  Computational Pangenomics
  ☆17Updated 3 years ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆37Updated 2 years ago
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated last year
• BGI-Qingdao / TGS-GapCloser2
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆16Updated last year