oclb / pantreeLinks
☆17Updated last month
Alternatives and similar repositories for pantree
Users that are interested in pantree are comparing it to the libraries listed below
Sorting:
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 9 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- SV calling for diploid assemblies☆28Updated last year
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆17Updated last month
- Statistics and analysis for variation graphs☆45Updated 9 months ago
- ☆37Updated last year
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated this week
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- WinPCA. A package for windowed principal component analysis.☆33Updated 3 weeks ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- FastK based version of Merqury☆28Updated 3 months ago
- Domain based annotation of transposable elements☆20Updated 4 months ago
- Extracting paths from assembly graphs☆24Updated last year
- ☆30Updated 4 months ago
- ☆25Updated last month
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆39Updated 11 months ago
- Programs implementing the trio-binning genome assembly method☆18Updated last year
- TD2☆17Updated 3 months ago
- ☆17Updated 8 months ago
- ☆27Updated 5 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- Computational Pangenomics☆17Updated 3 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- ☆30Updated 8 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 months ago