Genome Assembly 102
☆18Apr 23, 2025Updated last year
Alternatives and similar repositories for training
Users that are interested in training are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Apr 15, 2024Updated 2 years ago
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated last year
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A toolkit for exploring regions of variation in pangenomes☆14May 19, 2026Updated 3 weeks ago
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Jan 26, 2022Updated 4 years ago
- ☆19May 10, 2023Updated 3 years ago
- ☆42Dec 29, 2025Updated 5 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated last year
- Targeted genotyper for complex polymorphic genes☆41Updated this week
- ☆15Jun 29, 2021Updated 4 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆34Aug 18, 2025Updated 9 months ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- implicit pangenome graph☆107Updated this week
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 4 months ago
- Genome browser hub for the T2T genomes and resources☆27Apr 7, 2026Updated 2 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆37Apr 28, 2026Updated last month
- ☆190Feb 10, 2026Updated 3 months ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- Pangenome-based genome inference☆170Jun 2, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bayesian reconstruction of ancient DNA fragments☆30Aug 6, 2024Updated last year
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 2 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- bioinformatics toolkit in rust☆107May 14, 2026Updated 3 weeks ago
- Genotyping of copy number sensitive allele-specific haplotypes☆28May 20, 2026Updated 2 weeks ago
- Alignment-free pangenome browser and analysis toolkit☆83May 18, 2026Updated 3 weeks ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆154Jun 2, 2026Updated last week
- Code for blog post "{n} times faster than C, where n = 128"☆11Jul 20, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- GFA visualizer, GPU-accelerated using Vulkan☆77Aug 2, 2022Updated 3 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Computational Pangenomics☆17Jun 1, 2022Updated 4 years ago
- ☆11Sep 4, 2024Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆197May 11, 2025Updated last year
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated last year