Alternatives and similar repositories for training

Users that are interested in training are comparing it to the libraries listed below

• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆23Updated this week
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated 11 months ago
• human-pangenomics / hprc-tutorials
  ☆18Updated last year
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated last year
• at-cg / RAFT
  ☆28Updated last year
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆27Updated 4 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆29Updated 5 months ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆19Updated this week
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• MoinSebi / gfa2bin
  ☆26Updated 3 months ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆25Updated last year
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆26Updated 2 weeks ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Updated 3 months ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆16Updated last year
• ASLeonard / pandrawer
  Everything but the kitchen sink
  ☆11Updated 9 months ago
• hitbc / gcSV
  ☆21Updated 8 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆27Updated 2 months ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated 2 weeks ago
• pdishuck / GAVISUNK
  Genome Assembly Validation via Inter-SUNK distances in ONT reads
  ☆15Updated 2 years ago
• nlapalu / SDDetector
  Segmental duplication detection tool
  ☆16Updated 2 years ago
• gymrek-lab / LongTR
  Tandem repeat genotyping with long reads
  ☆32Updated last month
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆14Updated 2 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆26Updated 2 weeks ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆33Updated this week
• GTPB / CPANG22
  Computational Pangenomics
  ☆17Updated 3 years ago