Alternatives and similar repositories for training

Users that are interested in training are comparing it to the libraries listed below

• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆20Updated last year
• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated last year
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆25Updated 2 weeks ago
• at-cg / RAFT
  Improved long-read assembly by preserving contained reads
  ☆30Updated last year
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated 2 years ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 7 months ago
• MoinSebi / gfa2bin
  ☆28Updated 6 months ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated last year
• marbl / anianns
  ANI based satellite annotation
  ☆22Updated 3 months ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆31Updated 3 weeks ago
• pangenome / gfalace
  lace up GFA files using panSN path name sub-ranges to coordinate the lacing
  ☆14Updated 6 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated 2 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 4 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆29Updated last year
• ASLeonard / pandrawer
  Everything but the kitchen sink
  ☆12Updated last year
• pdishuck / GAVISUNK
  Genome Assembly Validation via Inter-SUNK distances in ONT reads
  ☆15Updated 2 years ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆23Updated last week
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆30Updated 4 months ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆35Updated last week
• gymrek-lab / LongTR
  Tandem repeat genotyping with long reads
  ☆35Updated 4 months ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆24Updated this week
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated last year
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆10Updated 3 months ago
• pangenome / genotypify
  Genotyping lots of samples with big pangenomes
  ☆11Updated 3 months ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆14Updated 2 years ago
• lh3 / TRF-mod
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆19Updated 6 months ago