anands-repo / helloLinks
DNN-based small variant caller
☆12Updated 3 years ago
Alternatives and similar repositories for hello
Users that are interested in hello are comparing it to the libraries listed below
Sorting:
- ☆14Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆15Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆16Updated 3 years ago
- Gene copy number prediction from k-mer frequencies☆13Updated last year
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- ☆12Updated 4 months ago
- Phasing reads with secondary alignments☆20Updated 10 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 10 months ago
- PGR-TK: Pangenome Research Tool Kit☆19Updated 6 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- ☆13Updated 3 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 3 weeks ago
- ☆10Updated 5 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 2 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- ☆20Updated last year
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆24Updated 3 weeks ago
- ☆14Updated 2 years ago
- Convert HAL to VG☆22Updated last year
- Non-parametric structural variant genotyper☆15Updated 3 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆11Updated 3 months ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- ☆21Updated 7 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 9 months ago