pangenome / povuView external linksLinks
A toolkit for exploring regions of variation in pangenomes
☆13Jan 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for povu
Users that are interested in povu are comparing it to the libraries listed below
Sorting:
- ☆15Jun 29, 2021Updated 4 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 3 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 3 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 6 months ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- General purpose utility related to GAF files☆29Jan 27, 2026Updated 2 weeks ago
- ANI based satellite annotation☆23Nov 7, 2025Updated 3 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 2 years ago
- COsine SImilarity-based Genotyper using pangenomes☆25Jan 23, 2026Updated 3 weeks ago
- ☆18May 10, 2023Updated 2 years ago
- implicit pangenome graph☆88Feb 9, 2026Updated last week
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 3 weeks ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Multiple sequence alignment of long tandem repeats☆25Jan 9, 2026Updated last month
- ☆18Jan 29, 2025Updated last year
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 4 months ago
- Everything but the kitchen sink☆12Feb 6, 2025Updated last year
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- ☆23Sep 9, 2025Updated 5 months ago
- ☆28Aug 7, 2025Updated 6 months ago
- Genome Assembly 102☆17Apr 23, 2025Updated 9 months ago
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- ☆41Feb 1, 2026Updated 2 weeks ago
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- convert PAF format to CHAIN format☆34May 14, 2025Updated 9 months ago
- Computational Pangenomics☆17Jun 1, 2022Updated 3 years ago
- Prefix-renaming FASTA records really fast.☆17Jun 26, 2024Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 2, 2025Updated last year
- ☆29Mar 27, 2024Updated last year
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 3 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- ☆19Apr 15, 2024Updated last year