WHops / NAHRwhals
R package and wrapper functions for identifying serial structural variations from genome assemblies
☆25Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for NAHRwhals
- use variant nesting information to flter overlapping sites from vg deconstruct output☆23Updated 5 months ago
- ☆19Updated 3 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- ☆32Updated last year
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- SV calling for diploid assemblies☆23Updated 8 months ago
- FastK based version of Merqury☆22Updated 3 weeks ago
- Improved Phased Assembler☆28Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆27Updated last week
- A Hi-C scaffolding method☆22Updated 2 years ago
- the pangenome graph evaluator☆23Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated last year
- ☆30Updated 2 weeks ago
- Tandem repeat genotyping with long reads☆25Updated 2 months ago
- ☆12Updated 7 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Updated 11 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 3 months ago
- ☆17Updated last month
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆24Updated 8 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- Prefix-renaming FASTA records really fast.☆15Updated 4 months ago
- assembly evaluation tool☆34Updated 2 years ago
- Genome alignment and synteny plots☆27Updated last year