WHops / NAHRwhals
R package and wrapper functions for identifying serial structural variations from genome assemblies
☆27Updated 6 months ago
Alternatives and similar repositories for NAHRwhals:
Users that are interested in NAHRwhals are comparing it to the libraries listed below
- ☆16Updated 11 months ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- ☆22Updated 7 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 9 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- FastK based version of Merqury☆23Updated 2 weeks ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆36Updated last month
- SV calling for diploid assemblies☆26Updated last year
- ☆30Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 3 months ago
- the pangenome graph evaluator☆26Updated 3 years ago
- A web-based, interactive pangenome visualization tool☆21Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 8 months ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆16Updated 2 weeks ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 2 weeks ago
- ☆16Updated last month
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- ☆28Updated 6 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- SV genotyper for long reads with a variation graph☆12Updated 2 weeks ago
- ☆35Updated last year
- Convert HAL to VG☆22Updated 7 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 3 weeks ago