WHops / NAHRwhals
R package and wrapper functions for identifying serial structural variations from genome assemblies
☆26Updated 5 months ago
Alternatives and similar repositories for NAHRwhals:
Users that are interested in NAHRwhals are comparing it to the libraries listed below
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 8 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- SV calling for diploid assemblies☆26Updated 11 months ago
- ☆14Updated 10 months ago
- ☆22Updated 6 months ago
- General purpose utility related to GAF files☆22Updated last month
- Genome assembly soft-masking using Red (REpeat Detector)☆16Updated 6 years ago
- FastK based version of Merqury☆22Updated 2 weeks ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 2 months ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated 2 weeks ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 7 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆36Updated 2 weeks ago
- ☆15Updated 3 weeks ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 months ago
- Computational Pangenomics☆17Updated 2 years ago
- ☆35Updated 11 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆37Updated 4 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆30Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 10 months ago
- the pangenome graph evaluator☆25Updated 3 years ago
- ☆32Updated 2 years ago