Alternatives and similar repositories for NAHRwhals

Users that are interested in NAHRwhals are comparing it to the libraries listed below

• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆32Updated 4 years ago
• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆30Updated last year
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆33Updated 4 years ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last month
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆35Updated 3 weeks ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 6 months ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• gymrek-lab / LongTR
  Tandem repeat genotyping with long reads
  ☆33Updated 3 months ago
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆24Updated last week
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆14Updated 2 years ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 8 months ago
• tprodanov / locityper
  Targeted genotyper for complex polymorphic genes
  ☆31Updated 2 weeks ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• at-cg / RAFT
  ☆30Updated last year
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆37Updated 3 years ago
• codeatcg / VRPG
  an interactive visualization and interpretation framework of reference-projected pangenome graphs
  ☆37Updated 10 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆29Updated 3 months ago
• maickrau / ribotin
  ☆38Updated 5 months ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• pangenome / pgge
  the pangenome graph evaluator
  ☆29Updated 4 years ago
• mrvollger / NucFreq
  ☆38Updated 2 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated last year
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated 2 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆38Updated 2 weeks ago
• vgteam / sv-genotyping-paper
  ☆31Updated 6 years ago