R package and wrapper functions for identifying serial structural variations from genome assemblies
☆29Sep 21, 2024Updated last year
Alternatives and similar repositories for NAHRwhals
Users that are interested in NAHRwhals are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- ☆15Apr 2, 2024Updated 2 years ago
- Phased structural variant discovery in pangenomes☆42Apr 20, 2026Updated 2 weeks ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- General purpose utility related to GAF files☆29Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated last month
- Transformer-based sequence correction method for genome assembly polishing☆100Mar 11, 2025Updated last year
- ☆23Sep 9, 2025Updated 7 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Targeted genotyper for complex polymorphic genes☆38Updated this week
- ☆18Jan 29, 2025Updated last year
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 3 weeks ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 7 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- Scripts and utilities for analyzing tandem repeats (TRs).☆45Apr 15, 2026Updated 2 weeks ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆33Aug 18, 2025Updated 8 months ago
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Apr 27, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Genotyping of copy number sensitive allele-specific haplotypes☆28Nov 6, 2025Updated 5 months ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Apr 17, 2026Updated 2 weeks ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 7 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 11 months ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36Updated this week
- Chromosome-level synteny plotting using orthologous regions☆32Sep 19, 2024Updated last year
- ☆12Apr 18, 2022Updated 4 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated 2 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 2 weeks ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆64Apr 17, 2026Updated 2 weeks ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆14Apr 27, 2026Updated last week
- Kmer Analysis of Pileups for Genotyping☆39Mar 6, 2026Updated last month
- ☆13Mar 28, 2018Updated 8 years ago