WHops / NAHRwhalsLinks
R package and wrapper functions for identifying serial structural variations from genome assemblies
☆29Updated last year
Alternatives and similar repositories for NAHRwhals
Users that are interested in NAHRwhals are comparing it to the libraries listed below
Sorting:
- ☆19Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- SV calling for diploid assemblies☆30Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Kmer Analysis of Pileups for Genotyping☆35Updated last week
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 11 months ago
- ☆38Updated 4 months ago
- COsine SImilarity-based Genotyper using pangenomes☆25Updated 2 weeks ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- ☆31Updated 6 years ago
- the pangenome graph evaluator☆29Updated 4 years ago
- ☆38Updated last month
- Improved long-read assembly by preserving contained reads☆30Updated last year
- A Hi-C scaffolding method☆22Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- FastK based version of Merqury☆30Updated 3 weeks ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- ☆22Updated 3 weeks ago
- Tandem repeat genotyping with long reads☆35Updated 4 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago
- ☆44Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago