gui11aume / mmp

Related projects ⓘ

Alternatives and complementary repositories for mmp

• alshai / rowbowt
  run-length BWT tools for genomic sequences
  ☆18Updated 2 years ago
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 5 years ago
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated 9 months ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated last year
• richarddurbin / hash10x
  a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly
  ☆15Updated 4 years ago
• collaborativebioinformatics / nibSV
  ☆9Updated 2 years ago
• lucian-ilie / SAGE2
  De novo genome assembler.
  ☆11Updated 6 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated last month
• ekg / wflign
  the we-flyin WFA-guided ultralong tiling sequence aligner
  ☆11Updated 3 years ago
• raja-appuswamy / accel-align-release
  A fast seed-embed-extend based sequence mapper and aligner
  ☆22Updated 2 months ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated last year
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆11Updated 8 months ago
• abs-tudelft / variant-calling-at-scale
  Scalable and High Performance Variant Calling on Cluster Environments
  ☆10Updated 2 years ago
• langmead-lab / vargas
  ☆25Updated 3 years ago
• mklarqvist / libflagstats
  Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
  ☆15Updated 4 years ago
• bioinfologics / sdg
  Sequence Distance Graph framework: graph + reads + mapping + analysis
  ☆25Updated 2 years ago
• adigenova / fast-sg
  Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
  ☆22Updated 6 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 3 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆18Updated 4 years ago
• lh3 / lh3-snippets
  ☆14Updated 4 years ago
• lynxoid / nimbliner
  nimble aligner that will map your reads to the references on a laptop
  ☆12Updated 7 years ago
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆11Updated this week
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• namsyvo / IVC
  Integrated Variant Caller
  ☆17Updated 6 years ago
• lh3 / unicall
  A wrapper for calling small variants from human germline high-coverage single-sample Illumina data
  ☆13Updated 5 years ago
• HKU-BAL / Translocator
  Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…
  ☆13Updated 4 years ago
• TavorB / spectral_jaccard_similarity
  ☆14Updated last year
• AntonBankevich / jumboDB
  De Bruijn graph construction for large k.
  ☆18Updated 3 years ago
• jaudoux / kamix
  Index and query k-mer matrices in BGZF
  ☆13Updated 6 years ago