Alternatives and similar repositories for mmp

Users that are interested in mmp are comparing it to the libraries listed below

• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 9 months ago
• collaborativebioinformatics / nibSV
  ☆9Updated 3 years ago
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• richarddurbin / hash10x
  a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly
  ☆15Updated 5 years ago
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated 3 weeks ago
• VCCRI / dv-trio
  dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…
  ☆11Updated 4 years ago
• taylor-lab / annotateMaf
  Add functional variant annotation to MAF file
  ☆11Updated 8 months ago
• VeryAmazed / digest
  ☆15Updated 2 months ago
• lh3 / lh3-snippets
  ☆14Updated 5 years ago
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆12Updated last year
• lucian-ilie / SAGE2
  De novo genome assembler.
  ☆11Updated 7 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 3 years ago
• langmead-lab / vargas
  ☆25Updated 4 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• alshai / rowbowt
  run-length BWT tools for genomic sequences
  ☆19Updated 3 years ago
• DReichLab / adna
  Processing WGS aDNA data using the ReichLab protocol
  ☆13Updated 6 years ago
• jslfree080 / bamscope
  A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
  ☆10Updated last year
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆22Updated 5 years ago
• lh3 / naivepca
  Naive PCA for genotype data
  ☆10Updated 9 years ago
• thegenemyers / DAMAPPER
  Long read to reference genome mapping tool
  ☆13Updated last year
• LiuBioinfo / SeqOthello
  SeqOthello supports fast coverage query and containment query.
  ☆12Updated 6 years ago
• ma-compbio / Weaver
  Allele-Specific Quantification of Structural Variations in Cancer Genomes
  ☆18Updated 6 years ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• nh13 / fqme
  ☆22Updated 8 months ago
• lynxoid / nimbliner
  nimble aligner that will map your reads to the references on a laptop
  ☆12Updated 8 years ago
• gregorykucherov / mreps
  mreps: software for tandem repeat identification in DNA
  ☆14Updated 5 years ago
• ekg / wflign
  the we-flyin WFA-guided ultralong tiling sequence aligner
  ☆11Updated 4 years ago
• fedarko / strainFlye
  Pipeline for analyzing (rare) mutations in metagenome-assembled genomes
  ☆11Updated 4 months ago