AlgoLab / RecGraphLinks
Optimal sequence-to-graph alignment with recombinations
☆32Updated 3 months ago
Alternatives and similar repositories for RecGraph
Users that are interested in RecGraph are comparing it to the libraries listed below
Sorting:
- Fast and exact gap-affine partial order alignment☆51Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 7 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 4 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆24Updated last month
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆33Updated last year
- Iterate over minimizers of a DNA sequence☆29Updated 10 months ago
- ☆28Updated 8 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 6 months ago
- GFA insert into GenomicSQLite☆49Updated 3 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 2 months ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆61Updated last week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆24Updated 6 months ago
- ☆42Updated 3 months ago
- General purpose utility related to GAF files☆28Updated this week
- Extracting paths from assembly graphs☆23Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆22Updated this week
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 8 months ago
- 1-code framework: docs, C-library, and tools☆17Updated 4 months ago
- Multiple sequence alignment of long tandem repeats☆16Updated 2 months ago
- Differential k-mer analysis☆36Updated last year
- Targeted genotyper for complex polymorphic genes☆20Updated 2 weeks ago
- Statistics and analysis for variation graphs☆40Updated 5 months ago
- Rust wrapper for the next generation (still currently in C++)☆25Updated this week
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 3 weeks ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated this week