AlgoLab / RecGraphLinks
Optimal sequence-to-graph alignment with recombinations
☆32Updated 4 months ago
Alternatives and similar repositories for RecGraph
Users that are interested in RecGraph are comparing it to the libraries listed below
Sorting:
- Fast and exact gap-affine partial order alignment☆51Updated 2 weeks ago
- ☆28Updated 8 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 weeks ago
- convert variation graph alignments to coverage maps over nodes☆24Updated this week
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 2 months ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 7 months ago
- Extracting paths from assembly graphs☆23Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 7 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- GBWT in Rust☆43Updated 2 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 7 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆37Updated last year
- ☆41Updated 2 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆22Updated this week
- Iterate over minimizers of a DNA sequence☆29Updated 11 months ago
- Statistics and analysis for variation graphs☆40Updated 6 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated last week
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 6 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 8 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆35Updated last year
- Differential k-mer analysis☆36Updated last year
- Sketch-based surveillance platform☆13Updated 6 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 7 months ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated 3 months ago
- ☆24Updated 6 months ago
- the pangenome graph evaluator☆27Updated 4 years ago
- ☆17Updated 4 years ago
- recompute GFA link overlaps☆25Updated 2 years ago