Optimal sequence-to-graph alignment with recombinations
☆40Jul 25, 2025Updated 7 months ago
Alternatives and similar repositories for RecGraph
Users that are interested in RecGraph are comparing it to the libraries listed below
Sorting:
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last month
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 6 months ago
- ☆19May 10, 2023Updated 2 years ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated 9 months ago
- GBZ file format for pangenome graphs☆46Feb 18, 2026Updated last month
- ☆23Sep 9, 2025Updated 6 months ago
- implicit pangenome graph☆97Mar 13, 2026Updated last week
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- ☆286Dec 29, 2025Updated 2 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- ☆29Mar 27, 2024Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- A Rust-based library for phylogenetic analysis and manipulation☆16Feb 10, 2026Updated last month
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 10 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.