AdamCicherski / AlfaPangLinks
AlfaPang builds pangenome graphs without alignments or references.
☆14Updated 2 months ago
Alternatives and similar repositories for AlfaPang
Users that are interested in AlfaPang are comparing it to the libraries listed below
Sorting:
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- De novo clustering of long transcript reads into genes☆18Updated 3 weeks ago
- convert variation graph alignments to coverage maps over nodes☆26Updated last month
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆22Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- ☆28Updated 5 months ago
- Extracting paths from assembly graphs☆24Updated last year
- Long-read aligner to pangenome graphs☆29Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Genome Assembly 102☆17Updated 8 months ago
- ☆19Updated last year
- ☆30Updated last year
- ☆19Updated 10 months ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 7 months ago
- COsine SImilarity-based Genotyper using pangenomes☆24Updated 2 weeks ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 4 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆12Updated 3 months ago
- Phasing reads with secondary alignments☆21Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- General purpose utility related to GAF files☆29Updated last month
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated 2 years ago
- Convert HAL to VG☆23Updated last year
- Differential k-mer analysis☆39Updated last year
- base-level dotplots from PAF alignments☆28Updated 3 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 6 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆28Updated last week
- JTK -- a regional diploid genome assembler☆25Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- Kmer Analysis of Pileups for Genotyping☆35Updated last month