AdamCicherski / AlfaPangLinks
AlfaPang builds pangenome graphs without alignments or references.
☆13Updated 2 weeks ago
Alternatives and similar repositories for AlfaPang
Users that are interested in AlfaPang are comparing it to the libraries listed below
Sorting:
- De novo clustering of long transcript reads into genes☆17Updated 6 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- ☆18Updated last year
- Long-read aligner to pangenome graphs☆28Updated last year
- ☆19Updated 9 months ago
- Genome Assembly 102☆14Updated 7 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated last week
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- ☆26Updated 3 months ago
- convert variation graph alignments to coverage maps over nodes☆26Updated 2 weeks ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Kmer Analysis of Pileups for Genotyping☆33Updated last week
- Prefix-renaming FASTA records really fast.☆16Updated last year
- Genotyping of copy number sensitive allele-specific haplotypes☆26Updated 2 weeks ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- Extracting paths from assembly graphs☆24Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 3 months ago
- ☆28Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 5 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated last month
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Updated last month
- base-level dotplots from PAF alignments☆27Updated 2 months ago
- COsine SImilarity-based Genotyper using pangenomes☆23Updated this week
- Phasing reads with secondary alignments☆21Updated 11 months ago
- General purpose utility related to GAF files☆29Updated 2 weeks ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- ☆17Updated 9 months ago
- Differential k-mer analysis☆37Updated last year