AdamCicherski / AlfaPangView external linksLinks
AlfaPang builds pangenome graphs without alignments or references.
☆15Nov 7, 2025Updated 3 months ago
Alternatives and similar repositories for AlfaPang
Users that are interested in AlfaPang are comparing it to the libraries listed below
Sorting:
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Sep 6, 2025Updated 5 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 9 months ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆15Jan 30, 2026Updated 2 weeks ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆34May 23, 2025Updated 8 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated last month
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆44Dec 1, 2025Updated 2 months ago
- ☆13Dec 26, 2025Updated last month
- ☆18May 10, 2023Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- ☆19Feb 15, 2025Updated 11 months ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 2 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Jun 4, 2019Updated 6 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 3 months ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- GFA parser in Rust☆30May 26, 2023Updated 2 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 2, 2026Updated last week
- Show pangenome graphs in an easy way☆58Aug 7, 2025Updated 6 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆10Dec 29, 2025Updated last month
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- base-level dotplots from PAF alignments☆31Sep 18, 2025Updated 4 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 3 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 3 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 3 years ago
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 10 months ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Genome annotation pre-publication results☆24Dec 22, 2025Updated last month
- Targeted genotyper for complex polymorphic genes☆36Updated this week
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 3 weeks ago
- Web based viewer for small to medium GFA format files, similar to Bandage☆12Nov 14, 2025Updated 3 months ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated last year
- Just another minhash implementation.☆12Updated this week
- ☆12Jun 7, 2024Updated last year