AlfaPang builds pangenome graphs without alignments or references.
☆18Oct 16, 2026Updated 2 weeks ago
Alternatives and similar repositories for AlfaPang
Users that are interested in AlfaPang are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 9 months ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆63Sep 6, 2025Updated last year
- ☆12Jul 24, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- online variation graph induction☆12Oct 21, 2025Updated last year
- Utilities to manipulate pangenome collections using multi-MUMs☆20Updated this week
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆55Jul 29, 2026Updated 3 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 8 months ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 6 months ago
- ☆25Sep 22, 2026Updated last month
- Enumerating bubbles in pangenome graphs☆16Oct 19, 2026Updated 2 weeks ago
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast long-read RNA-seq mapping to a transcriptome with locally consistent parsing☆22Oct 27, 2026Updated last week
- KaryoScope: rapid, alignment-free sequence annotation for the pangenome era☆29Oct 21, 2026Updated last week
- SV genotyper for long reads with a variation graph☆17Sep 28, 2026Updated last month
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated 2 weeks ago
- A tool for pangenome graph-based phased diploid genome inference.☆10Sep 19, 2026Updated last month
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 3 months ago
- Phased structural variant discovery in pangenomes☆44Oct 9, 2026Updated 3 weeks ago
- ☆10May 27, 2025Updated last year
- Clustering tool optimized for sparse distance matrices: ~16M elements with ~190M connections clustered in minutes.☆16Sep 12, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Reference bias measuring toolkit☆22Mar 12, 2026Updated 7 months ago
- Bash scripts and data used in pantranscriptomic paper☆25Oct 21, 2022Updated 4 years ago
- implicit pangenome graph☆114Updated this week
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated last week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆140Sep 8, 2026Updated last month
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 3 months ago
- Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph☆12Sep 11, 2025Updated last year
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rapid alignment-free method for introgression screening and GWAS using k-mer profiles☆32Oct 27, 2026Updated last week
- ☆32Oct 7, 2026Updated 3 weeks ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- ☆17Aug 25, 2025Updated last year
- ☆14Dec 26, 2025Updated 10 months ago
- Panaln: Indexing pangenome for read alignment☆10Apr 16, 2025Updated last year
- Deep Learning Framework for Transposable Element Discovery and Annotation☆12Aug 18, 2026Updated 2 months ago