Alternatives and similar repositories for pantas

Users that are interested in pantas are comparing it to the libraries listed below

• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• hitbc / gcSV
  ☆21Updated 6 months ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆26Updated 2 months ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆32Updated this week
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 8 months ago
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆24Updated 2 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• JustinChu / ntsm
  This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…
  ☆29Updated 9 months ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• hillerlab / CESAR2.0
  ☆28Updated 2 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 11 months ago
• Bean061 / ptgaul
  chloroplast genome assembly using long reads data
  ☆13Updated last month
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆11Updated last year
• GeneDx / pgr-tk-notebooks
  ☆16Updated 2 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 8 months ago
• farhangus / Sniffles2_plot
  ☆31Updated last year
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆20Updated 9 months ago
• PacificBiosciences / trgt-denovo
  De novo tandem repeat calling from PacBio HiFi data
  ☆18Updated 2 months ago
• liu3zhenlab / homotools
  ☆27Updated this week
• lh3 / minisplice
  Scoring GT/AG sites for improving spliced alignment
  ☆45Updated last month
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆31Updated 4 years ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆19Updated 2 years ago
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆30Updated 5 years ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 6 years ago
• marbl / training
  Genome Assembly 102
  ☆15Updated 4 months ago
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆20Updated last year
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆33Updated 6 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆13Updated 2 years ago
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated last year