Differential quantification of alternative splicing events on spliced pangenome graphs
☆16Jan 30, 2026Updated 7 months ago
Alternatives and similar repositories for pantas
Users that are interested in pantas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AlfaPang builds pangenome graphs without alignments or references.☆17Nov 7, 2025Updated 9 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 3 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 10 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆19May 10, 2023Updated 3 years ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆60Sep 6, 2025Updated 11 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆58Mar 7, 2025Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆36Aug 18, 2026Updated last week
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 2 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 4 months ago
- ☆46Apr 18, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- crussmap is a faster tool to convert genome coordinates between difference reference assemblies.☆24May 4, 2023Updated 3 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 10 months ago
- General purpose utility related to GAF files☆37Aug 6, 2026Updated 3 weeks ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- Suite of tools for pangenomics built using vg☆25Mar 6, 2026Updated 5 months ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Visualization toolkit for differential splicing events☆21Apr 19, 2026Updated 4 months ago
- Targeted genotyper for complex polymorphic genes☆45Updated this week
- Methylation analysis pipeline for genome graph☆16May 25, 2025Updated last year
- Reference bias measuring toolkit☆21Mar 12, 2026Updated 5 months ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆96Aug 2, 2026Updated 3 weeks ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Jun 18, 2026Updated 2 months ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 7 months ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated 2 years ago
- Find and decompose genomic variation sites in pangenome graphs☆16Aug 17, 2026Updated last week
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 4 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year