Multiple sequence alignment of long tandem repeats
☆26Jan 9, 2026Updated 3 months ago
Alternatives and similar repositories for centrolign
Users that are interested in centrolign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 5 months ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated 2 months ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 2 months ago
- ☆39Dec 29, 2025Updated 3 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated 2 months ago
- Phased structural variant discovery in pangenomes☆41Apr 3, 2026Updated last week
- Genotyping of copy number sensitive allele-specific haplotypes☆28Nov 6, 2025Updated 5 months ago
- GBZ file format for pangenome graphs☆46Updated this week
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- syncmer graphs, and perhaps other sorts of sequence graphs☆33Apr 1, 2026Updated 2 weeks ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 5 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- GFA visualizer, GPU-accelerated using Vulkan☆77Aug 2, 2022Updated 3 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 2 months ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 3 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 8 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆129Apr 8, 2026Updated last week
- ☆23Sep 9, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆67Apr 9, 2024Updated 2 years ago
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- ☆38Oct 6, 2025Updated 6 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated last year
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- ☆62Sep 15, 2025Updated 7 months ago
- Fast and exact gap-affine partial order alignment☆61Mar 22, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆14Apr 6, 2026Updated last week
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆101Apr 22, 2025Updated 11 months ago
- Targeted genotyper for complex polymorphic genes☆38Apr 1, 2026Updated 2 weeks ago
- ☆42Updated this week
- ☆102Apr 22, 2024Updated last year
- General purpose utility related to GAF files☆29Updated this week
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 11 months ago