Multiple sequence alignment of long tandem repeats
☆31Jun 23, 2026Updated 2 months ago
Alternatives and similar repositories for centrolign
Users that are interested in centrolign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 2 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 4 months ago
- Variant Calling for the HPRC2☆16May 26, 2026Updated 3 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- plane sweep filtering genome alignments☆24Jul 25, 2026Updated last month
- Enumerating bubbles in pangenome graphs☆16Aug 26, 2026Updated last week
- ☆30Jul 13, 2026Updated last month
- ☆45Dec 29, 2025Updated 8 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 10 months ago
- A multiscale pangenome browser☆35Jul 18, 2026Updated last month
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- ☆31Mar 27, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆137Jul 29, 2026Updated last month
- COsine SImilarity-based Genotyper using pangenomes☆36Updated this week
- ☆68Apr 9, 2024Updated 2 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Aug 4, 2026Updated last month
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- ☆18Jan 29, 2025Updated last year
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆24Jul 1, 2026Updated 2 months ago
- ☆46Apr 18, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Evaluating genome assemblies☆125Mar 3, 2026Updated 6 months ago
- implicit pangenome graph☆110Aug 8, 2026Updated 3 weeks ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated last week
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 8 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆44Aug 28, 2026Updated last week
- GBZ file format for pangenome graphs☆46Aug 24, 2026Updated last week
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 6 months ago
- Centromere mapping and annotation pipeline☆28Jun 26, 2026Updated 2 months ago
- Post-verkko graph and assembly curation in Python.☆30Aug 20, 2026Updated 2 weeks ago
- Phased structural variant discovery in pangenomes☆43Jul 27, 2026Updated last month
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- Pangenome-based genome inference☆180Aug 18, 2026Updated 2 weeks ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago