jeizenga / centrolignView external linksLinks
Multiple sequence alignment of long tandem repeats
☆25Jan 9, 2026Updated last month
Alternatives and similar repositories for centrolign
Users that are interested in centrolign are comparing it to the libraries listed below
Sorting:
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 3 months ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 3 weeks ago
- ☆38Dec 29, 2025Updated last month
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- A toolkit for exploring regions of variation in pangenomes☆13Jan 30, 2026Updated 2 weeks ago
- COsine SImilarity-based Genotyper using pangenomes☆25Jan 23, 2026Updated 3 weeks ago
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 3 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- GBWT in Rust☆45Dec 26, 2025Updated last month
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 6 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 3 months ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 3 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Jan 6, 2026Updated last month
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 2, 2026Updated last week
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 10 months ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆14Aug 25, 2025Updated 5 months ago
- ☆23Sep 9, 2025Updated 5 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆75Aug 2, 2022Updated 3 years ago
- ANI based satellite annotation☆23Nov 7, 2025Updated 3 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆128Dec 8, 2025Updated 2 months ago
- Targeted genotyper for complex polymorphic genes☆36Updated this week
- ☆38Oct 6, 2025Updated 4 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jan 31, 2026Updated 2 weeks ago
- ☆62Sep 15, 2025Updated 4 months ago
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last week
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- ☆18May 10, 2023Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 2 years ago