maickrau / ribotin
☆32Updated 2 weeks ago
Alternatives and similar repositories for ribotin:
Users that are interested in ribotin are comparing it to the libraries listed below
- ☆34Updated 2 years ago
- SV calling for diploid assemblies☆27Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 5 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated 3 weeks ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 5 months ago
- ☆29Updated 4 months ago
- Identification of transposable element families from pangenome polymorphisms☆45Updated 2 months ago
- ☆30Updated 5 years ago
- ☆36Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆20Updated 9 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆41Updated 6 months ago
- Variant annotation and merging pipeline☆34Updated last month
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 2 years ago
- Statistics and analysis for variation graphs☆39Updated 4 months ago
- ☆42Updated 11 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆28Updated 9 months ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- ☆17Updated last year
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆76Updated 4 years ago