maickrau / ribotin
☆32Updated this week
Alternatives and similar repositories for ribotin:
Users that are interested in ribotin are comparing it to the libraries listed below
- ☆34Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 2 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Identification of transposable element families from pangenome polymorphisms☆44Updated 6 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆33Updated 3 months ago
- ☆35Updated 11 months ago
- ☆29Updated last month
- Variant annotation and merging pipeline☆31Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 6 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆46Updated last year
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆29Updated 2 months ago
- ☆42Updated 9 months ago
- ☆30Updated 5 years ago
- ☆76Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last week
- ☆76Updated 4 months ago
- SV calling for diploid assemblies☆24Updated 10 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆18Updated last year
- Statistics and analysis for variation graphs☆37Updated 2 months ago
- A battery of methylation tools for PacBio HiFi reads☆31Updated 2 months ago
- ☆28Updated 6 months ago
- Improved Phased Assembler☆28Updated 2 years ago
- TGS scaffolding☆46Updated 3 years ago