AlgoLab / pangeblocks
pangenome from maximal blocks in an MSA
☆11Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for pangeblocks
- ☆21Updated last month
- MEMO: MEM-based pangenome indexing for k-mer queries☆16Updated 5 months ago
- Extracting paths from assembly graphs☆22Updated 6 months ago
- Optimal sequence-to-graph alignment with recombinations☆25Updated last week
- Prefix-renaming FASTA records really fast.☆15Updated 4 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆12Updated 7 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆16Updated last month
- Statistics and analysis for variation graphs☆31Updated this week
- ☆19Updated 3 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆31Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆35Updated 11 months ago
- convert variation graph alignments to coverage maps over nodes☆21Updated last week
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆11Updated last year
- FastK based version of Merqury☆22Updated 3 weeks ago
- A web-based, interactive pangenome visualization tool☆19Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆23Updated 5 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆25Updated 7 months ago
- ☆11Updated last week
- Web based viewer for small to medium GFA format files, similar to Bandage☆10Updated last month
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆33Updated last month
- Rust implementation of Flavia95's GFAtoVCF☆16Updated 2 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 3 weeks ago
- Convert HAL to VG☆21Updated 3 months ago
- Scaffolding with Ultralong Reads☆14Updated 4 years ago
- the pangenome graph evaluator☆23Updated 3 years ago
- A K-mer classifier for HiFi reads☆8Updated 9 months ago
- ☆15Updated 3 years ago