pangenome from maximal blocks in an MSA
☆11Sep 17, 2024Updated last year
Alternatives and similar repositories for pangeblocks
Users that are interested in pangeblocks are comparing it to the libraries listed below
Sorting:
- AlfaPang builds pangenome graphs without alignments or references.☆15Nov 7, 2025Updated 3 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 10 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 9 months ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Jan 20, 2026Updated last month
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 2 months ago
- Optimal sequence-to-graph alignment with recombinations☆40Jul 25, 2025Updated 7 months ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆34May 23, 2025Updated 9 months ago
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated 9 months ago
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆45Feb 10, 2026Updated 2 weeks ago
- ☆13Dec 26, 2025Updated 2 months ago
- ☆19Feb 15, 2025Updated last year
- ☆15Jun 29, 2021Updated 4 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- Tools for working with agp files☆19Jun 26, 2025Updated 8 months ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆37Jan 7, 2026Updated last month
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated last week
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated 2 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- Show pangenome graphs in an easy way☆58Aug 7, 2025Updated 6 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- PlantCAD: cross-species modeling of plant genomes☆62Feb 20, 2026Updated last week
- linearize and simplify variation graphs using blocked partial order alignment☆60Jul 22, 2025Updated 7 months ago
- A organelle de novo genome assembly toolkit☆74Feb 22, 2025Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 3 months ago
- ☆41Feb 15, 2026Updated last week
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Jun 13, 2025Updated 8 months ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 3 years ago
- ☆10Nov 4, 2021Updated 4 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 2 months ago
- Genome annotation pre-publication results☆25Updated this week
- Elementi di Bioinformatica: Materiale☆14Nov 14, 2025Updated 3 months ago
- Convert HAL to VG☆23Aug 12, 2024Updated last year