AlgoLab / pangeblocksLinks
pangenome from maximal blocks in an MSA
☆11Updated last year
Alternatives and similar repositories for pangeblocks
Users that are interested in pangeblocks are comparing it to the libraries listed below
Sorting:
- A toolkit for exploring regions of variation in a variation graph☆12Updated last month
- ☆17Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 4 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆20Updated 3 weeks ago
- base-level dotplots from PAF alignments☆28Updated 2 months ago
- ☆28Updated 4 months ago
- Long-read aligner to pangenome graphs☆28Updated last year
- AlfaPang builds pangenome graphs without alignments or references.☆14Updated last month
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated 4 months ago
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- Pangenome Mutation-Annotated Networks☆15Updated last month
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆23Updated this week
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- Genome Assembly 102☆16Updated 7 months ago
- Convert HAL to VG☆23Updated last year
- Prefix-renaming FASTA records really fast.☆16Updated last year
- ☆18Updated 10 months ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆33Updated 6 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated last month
- General purpose utility related to GAF files☆29Updated 2 weeks ago
- ☆23Updated 3 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Updated 2 years ago
- Phasing reads with secondary alignments☆21Updated last year
- Web based viewer for small to medium GFA format files, similar to Bandage☆12Updated last month
- ☆13Updated last month
- ☆28Updated last year