Alternatives and similar repositories for pangeblocks

Users that are interested in pangeblocks are comparing it to the libraries listed below

• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Updated 2 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• AdamCicherski / AlfaPang
  AlfaPang builds pangenome graphs without alignments or references.
  ☆12Updated 3 months ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆27Updated last year
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆26Updated this week
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆27Updated last month
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆16Updated last year
• pangenome / povu
  A toolkit for exploring regions of variation in a variation graph
  ☆12Updated last week
• MoinSebi / gfa2bin
  ☆25Updated 2 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆25Updated 11 months ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆19Updated last month
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated last year
• chfi / pafview
  ☆17Updated 8 months ago
• davidebolo1993 / cosigt
  COsine-based SImilarity Genotyper using pangenomes
  ☆21Updated last week
• marbl / training
  Genome Assembly 102
  ☆14Updated 6 months ago
• TurakhiaLab / panman
  Pangenome Mutation-Annotated Networks
  ☆15Updated this week
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆22Updated last week
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆10Updated 4 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• chfi / gfainject
  ☆17Updated 2 years ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last month
• Adamtaranto / TIRmite
  Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
  ☆10Updated 3 months ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆23Updated 2 weeks ago
• at-cg / RAFT
  ☆28Updated last year
• uio-bmi / NucBreak
  Location of structural errors in a genome assembly and structural variations between a pair of genomes
  ☆11Updated 6 years ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆31Updated 3 weeks ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆11Updated 6 years ago