AlgoLab / pangeblocksLinks
pangenome from maximal blocks in an MSA
☆11Updated 9 months ago
Alternatives and similar repositories for pangeblocks
Users that are interested in pangeblocks are comparing it to the libraries listed below
Sorting:
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last month
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆16Updated 2 years ago
- Pangenome Mutation-Annotated Networks☆15Updated last month
- convert variation graph alignments to coverage maps over nodes☆24Updated last week
- Extracting paths from assembly graphs☆23Updated last year
- Prefix-renaming FASTA records really fast.☆17Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 9 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆15Updated 3 weeks ago
- ☆28Updated 9 months ago
- AlfaPang builds pangenome graphs without alignments or references.☆10Updated 2 weeks ago
- ☆20Updated last week
- Genome Assembly 102☆14Updated 2 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆13Updated 2 years ago
- General purpose utility related to GAF files☆28Updated last month
- ☆24Updated 6 months ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆12Updated 3 weeks ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 7 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆32Updated last month
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 7 months ago
- Computational Pangenomics☆17Updated 3 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 8 months ago
- ☆17Updated last year
- ☆25Updated 10 months ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Phasing of dikaryotic fungal genome assemblies☆13Updated 2 years ago