ekg / gimbricate
recompute GFA link overlaps
☆25Updated 2 years ago
Alternatives and similar repositories for gimbricate:
Users that are interested in gimbricate are comparing it to the libraries listed below
- ☆17Updated 4 years ago
- Extracting paths from assembly graphs☆22Updated 10 months ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 9 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 4 months ago
- convert variation graph alignments to coverage maps over nodes☆23Updated last month
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- ☆15Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- the pangenome graph evaluator☆26Updated 3 years ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 9 months ago
- ☆10Updated 4 years ago
- Prefix-renaming FASTA records really fast.☆17Updated 8 months ago
- Align subreads to ccs reads☆13Updated last year
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- ☆16Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- ☆15Updated last week
- Code to create a PRG from a Multiple Sequence Alignment file☆24Updated 11 months ago
- ☆32Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 10 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 6 months ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- ☆22Updated 7 months ago