ekg / gimbricate
recompute GFA link overlaps
☆25Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for gimbricate
- Extracting paths from assembly graphs☆22Updated 6 months ago
- Scaffolding with Ultralong Reads☆14Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Align subreads to ccs reads☆13Updated last year
- ☆16Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- Prefix-renaming FASTA records really fast.☆15Updated 4 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆23Updated 5 months ago
- Differential k-mer analysis☆33Updated 9 months ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Statistics and analysis for variation graphs☆31Updated this week
- Long read aligner for cyclic and acyclic pangenome graphs☆35Updated 11 months ago
- convert variation graph alignments to coverage maps over nodes☆21Updated this week
- ☆10Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- ☆32Updated last year
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆16Updated 5 months ago
- ☆19Updated 3 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆25Updated 2 months ago
- ☆21Updated last month
- ☆16Updated 2 years ago
- the pangenome graph evaluator☆23Updated 3 years ago
- FastK based version of Merqury☆22Updated 3 weeks ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- ☆15Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆34Updated 9 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆25Updated 2 months ago