ekg / gimbricateLinks
recompute GFA link overlaps
☆25Updated 2 years ago
Alternatives and similar repositories for gimbricate
Users that are interested in gimbricate are comparing it to the libraries listed below
Sorting:
- Differential k-mer analysis☆36Updated last year
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 weeks ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- ☆17Updated 4 years ago
- ☆28Updated 9 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 7 months ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆24Updated 7 months ago
- ☆20Updated this week
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated last month
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆28Updated 9 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆37Updated last year
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- Long-read aligner to pangenome graphs☆26Updated last year
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Prefix-renaming FASTA records really fast.☆17Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- the pangenome graph evaluator☆27Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago
- ☆10Updated 5 years ago
- General purpose utility related to GAF files☆28Updated last week
- Genome Assembly 102☆14Updated 2 months ago
- ☆16Updated 3 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last month
- Targeted genotyper for complex polymorphic genes☆20Updated last week