ACEnglish / kanpigLinks
Kmer Analysis of Pileups for Genotyping
☆35Updated last week
Alternatives and similar repositories for kanpig
Users that are interested in kanpig are comparing it to the libraries listed below
Sorting:
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- ☆22Updated 3 weeks ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- ☆19Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- SV calling for diploid assemblies☆30Updated last year
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- ☆38Updated 4 months ago
- Tandem repeat genotyping with long reads☆35Updated 4 months ago
- ☆31Updated 9 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- Phased structural variant discovery in pangenomes☆39Updated 2 months ago
- ☆38Updated last month
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 9 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆31Updated 6 years ago
- ☆33Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆25Updated 2 weeks ago
- convert PAF format to CHAIN format☆34Updated 8 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 11 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- Method to optimally select samples for validation and resequencing☆30Updated 4 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Updated last week
- Segmental Duplication Assembler (SDA).☆43Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Easy genomic regions for short-read variant calling☆45Updated 5 months ago