ACEnglish / kanpigLinks
Kmer Analysis of Pileups for Genotyping
☆32Updated this week
Alternatives and similar repositories for kanpig
Users that are interested in kanpig are comparing it to the libraries listed below
Sorting:
- ☆21Updated 6 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 9 months ago
- ☆17Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated 2 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆49Updated 3 weeks ago
- SV calling for diploid assemblies☆28Updated last year
- ☆36Updated last month
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 6 months ago
- Phased structural variant discovery in pangenomes☆35Updated last year
- ☆37Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- Tandem repeat genotyping with long reads☆29Updated 3 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- Phasing reads with secondary alignments☆20Updated 9 months ago
- Computational Pangenomics☆17Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- ☆31Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- ☆21Updated this week
- FastK based version of Merqury☆28Updated 2 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago