ACEnglish / kanpigLinks
Kmer Analysis of Pileups for Genotyping
☆32Updated 2 weeks ago
Alternatives and similar repositories for kanpig
Users that are interested in kanpig are comparing it to the libraries listed below
Sorting:
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 9 months ago
- ☆21Updated 6 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- ☆18Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated 2 weeks ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 9 months ago
- SV calling for diploid assemblies☆28Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆32Updated 4 months ago
- ☆37Updated last year
- ☆36Updated last month
- Improved Phased Assembler☆28Updated 3 years ago
- Easy genomic regions for short-read variant calling☆43Updated last week
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- Tandem repeat genotyping with long reads☆30Updated 3 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- A battery of methylation tools for PacBio HiFi reads☆41Updated 2 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated this week
- ☆30Updated 4 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 months ago
- Genome Assembly 102☆15Updated 4 months ago
- ☆16Updated 2 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 7 months ago