Tools for working with agp files
☆19Jun 26, 2025Updated 9 months ago
Alternatives and similar repositories for agptools
Users that are interested in agptools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- ANI based satellite annotation☆26Mar 2, 2026Updated last month
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated 2 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- ☆30Aug 1, 2023Updated 2 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 5 months ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated 11 months ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆18Jan 12, 2026Updated 2 months ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Find and visualize rearrangements in DNA sequences☆55Dec 1, 2025Updated 4 months ago
- ☆23Sep 9, 2025Updated 7 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 6 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 4 months ago
- JTK -- a regional diploid genome assembler☆26Oct 20, 2024Updated last year
- ☆15Aug 6, 2018Updated 7 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 5 months ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 9 months ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Targeted genotyper for complex polymorphic genes☆38Apr 1, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 4 months ago
- General purpose utility related to GAF files☆29Apr 2, 2026Updated last week
- Misassembly Identifier☆18Updated this week
- Resources for the Col-CEN reference genome assemblies☆11Feb 15, 2022Updated 4 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- ☆13May 27, 2025Updated 10 months ago
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 6 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- several scripts for bioinformatics☆24Nov 27, 2025Updated 4 months ago
- ☆26Jan 29, 2026Updated 2 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 3 months ago
- Dynamic Elongation of a Genome Assembly Path☆25Feb 25, 2026Updated last month
- ☆38Oct 6, 2025Updated 6 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago