Phasing reads with secondary alignments
☆22Nov 30, 2024Updated last year
Alternatives and similar repositories for secphase
Users that are interested in secphase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 5 months ago
- Python package for comparing genome assemblies and read data to the diploid Q100 benchmark☆17Updated this week
- ☆44Dec 29, 2025Updated 7 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- ☆42Oct 6, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- ☆18Jan 29, 2025Updated last year
- Multiple sequence alignment of long tandem repeats☆31Jun 23, 2026Updated last month
- Evaluating genome assemblies☆125Mar 3, 2026Updated 5 months ago
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 5 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- ☆32Jun 18, 2026Updated last month
- ☆28May 12, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A gap-closing software tool that uses long reads to enhance genome assembly.☆24Apr 25, 2024Updated 2 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Centromere mapping and annotation pipeline☆28Jun 26, 2026Updated last month
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- TR annotation tool VAMPIRE☆19Jun 22, 2026Updated last month
- ☆22Updated this week
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- Phased structural variant discovery in pangenomes☆43Jul 27, 2026Updated 2 weeks ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆15Jun 29, 2026Updated last month
- ☆13Nov 15, 2017Updated 8 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 8 months ago
- ☆67Apr 9, 2024Updated 2 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 8 months ago
- A battery of methylation tools for PacBio HiFi reads☆54Jul 15, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 3 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆74Jun 27, 2026Updated last month
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 9 months ago
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 9 months ago
- Characterization of Structural Variation in Chinese samples☆17Dec 22, 2021Updated 4 years ago
- Make colorful identity heatmaps of genomic sequence☆139May 24, 2024Updated 2 years ago