mobinasri / secphaseLinks
Phasing reads with secondary alignments
☆21Updated last year
Alternatives and similar repositories for secphase
Users that are interested in secphase are comparing it to the libraries listed below
Sorting:
- Centromere mapping and annotation pipeline☆21Updated 3 weeks ago
- COsine SImilarity-based Genotyper using pangenomes☆25Updated 2 weeks ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Improved long-read assembly by preserving contained reads☆30Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 3 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 9 months ago
- Genome Assembly 102☆17Updated 9 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- ☆17Updated 2 weeks ago
- ANI based satellite annotation☆22Updated 3 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Genotyping lots of samples with big pangenomes☆11Updated 3 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- SINE annotation tool for plant genomes☆18Updated 2 years ago
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- FastK based version of Merqury☆30Updated 3 weeks ago
- ☆16Updated 4 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- ☆19Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 5 months ago