mobinasri / secphase
Phasing reads with secondary alignments
☆17Updated 4 months ago
Alternatives and similar repositories for secphase:
Users that are interested in secphase are comparing it to the libraries listed below
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 9 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 6 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- ☆16Updated 2 weeks ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Genome Assembly 102☆14Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 6 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆12Updated 2 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆15Updated last year
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 5 months ago
- ☆16Updated 11 months ago
- ☆16Updated last month
- ☆15Updated 3 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Convert HAL to VG☆22Updated 7 months ago
- Prefix-renaming FASTA records really fast.☆17Updated 9 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 9 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Consensus genome annotation using OMA☆22Updated 3 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 3 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- SINE annotation tool for plant genomes☆17Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated 10 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 3 weeks ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago