mobinasri / secphase

Related projects ⓘ

Alternatives and complementary repositories for secphase

• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆23Updated 4 months ago
• davidebolo1993 / cosigt
  ☆11Updated last week
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated last year
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆18Updated last week
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆29Updated 3 years ago
• pdishuck / GAVISUNK
  Genome Assembly Validation via Inter-SUNK distances in ONT reads
  ☆11Updated last year
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆25Updated last month
• LeilyR / Multi-genome-Reference
  A program to generate a graph which presents a simplified representation of several full length genomes
  ☆12Updated 6 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆26Updated 2 years ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆16Updated 3 weeks ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆19Updated 11 months ago
• LankyCyril / edgecase
  A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…
  ☆15Updated 9 months ago
• glogsdon1 / sunk-based_assembly
  ☆15Updated 3 years ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• kammoji / gapFinisher
  A reliable gap filling pipeline for draft genomes
  ☆11Updated 5 years ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆11Updated last month
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated 7 months ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆13Updated last year
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆16Updated last year
• at-cg / RAFT
  ☆18Updated 2 months ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 2 years ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆23Updated 7 months ago
• maojanlin / biastools
  ☆17Updated 2 weeks ago
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆12Updated 7 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆21Updated 2 months ago
• makovalab-psu / T2T_primate_XY
  ☆12Updated 5 months ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 2 years ago
• arangrhie / T2T-HG002Y
  Code repository for the T2T-Y paper
  ☆23Updated last year
• DecodeGenetics / LRcaller
  ☆16Updated 2 years ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆17Updated last month