ANI based satellite annotation
☆26Mar 2, 2026Updated last month
Alternatives and similar repositories for anianns
Users that are interested in anianns are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 6 months ago
- ☆15Jun 29, 2021Updated 4 years ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated 2 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 14, 2026Updated 2 weeks ago
- Domain based annotation of transposable elements☆23Oct 8, 2025Updated 6 months ago
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated 2 months ago
- Tools for working with agp files☆19Jun 26, 2025Updated 10 months ago
- ☆10Updated this week
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆30Feb 23, 2026Updated 2 months ago
- convert variation graph alignments to coverage maps over nodes☆26Jan 21, 2026Updated 3 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Pangenome Mutation-Annotated Networks☆41Apr 9, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 10 months ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- ☆23Sep 9, 2025Updated 7 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Updated this week
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Structural Variants ANnotator (SVAN)☆16Mar 17, 2026Updated last month
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Mar 25, 2026Updated last month
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- TD2☆38Jan 14, 2026Updated 3 months ago
- ☆30Aug 1, 2023Updated 2 years ago
- ☆29Aug 7, 2025Updated 8 months ago
- General purpose utility related to GAF files☆29Updated this week
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆63Apr 17, 2026Updated last week
- Genotyping of copy number sensitive allele-specific haplotypes☆28Nov 6, 2025Updated 5 months ago
- Identification of transposable element families from pangenome polymorphisms☆56Jun 3, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Multiple sequence alignment of long tandem repeats☆26Jan 9, 2026Updated 3 months ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 7 months ago
- implicit pangenome graph☆101Updated this week
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year