☆289Dec 29, 2025Updated 6 months ago
Alternatives and similar repositories for GraphAligner
Users that are interested in GraphAligner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sequence-to-graph mapper and graph generator☆483Aug 11, 2025Updated 11 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆252Dec 16, 2025Updated 7 months ago
- alignment to variation graph inducer☆163Jun 17, 2026Updated last month
- Graphical Fragment Assembly (GFA) Format Specification☆220Aug 21, 2024Updated last year
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆246Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆113Jun 6, 2021Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated 2 months ago
- the pangenome graph builder☆506Mar 31, 2026Updated 3 months ago
- tools for working with genome variation graphs☆1,325Updated this week
- linearize and simplify variation graphs using blocked partial order alignment☆63Mar 31, 2026Updated 3 months ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆75Feb 19, 2019Updated 7 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆402Apr 22, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆219Jun 21, 2026Updated 3 weeks ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Assembled Genomes Compressor☆186Jul 13, 2026Updated last week
- Long read / genome alignment software☆328Dec 16, 2025Updated 7 months ago
- ☆63Sep 15, 2025Updated 10 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆696Updated this week
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 6 months ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆790May 31, 2026Updated last month
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 2 months ago
- Pangenome-based genome inference☆175Jun 15, 2026Updated last month
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Structural Variant Identification Method using Genome Assemblies☆145Sep 16, 2022Updated 3 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆174Jun 3, 2026Updated last month
- k-mer based assembly evaluation☆349Jul 6, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pangenome graphs (review article on graph-based pangenomic methods)☆73Apr 15, 2020Updated 6 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆78Aug 2, 2022Updated 3 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated 2 years ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆225Jul 10, 2026Updated last week
- Fast and frugal disk based k-mer counter☆336Jul 7, 2026Updated last week
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- SIMD partial order alignment tool/library☆182Sep 21, 2025Updated 9 months ago