☆290Dec 29, 2025Updated 8 months ago
Alternatives and similar repositories for GraphAligner
Users that are interested in GraphAligner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sequence-to-graph mapper and graph generator☆487Aug 11, 2025Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 8 months ago
- alignment to variation graph inducer☆165Jul 29, 2026Updated last month
- Graphical Fragment Assembly (GFA) Format Specification☆222Aug 21, 2024Updated 2 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆250Aug 21, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆119Jun 6, 2021Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last week
- the pangenome graph builder☆513Jul 24, 2026Updated last month
- linearize and simplify variation graphs using blocked partial order alignment☆64Aug 21, 2026Updated last week
- tools for working with genome variation graphs☆1,334Updated this week
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆76Feb 19, 2019Updated 7 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆413Updated this week
- ☆102Apr 22, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 4 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- A fast approximate aligner for long DNA sequences☆290Oct 11, 2024Updated last year
- Assembled Genomes Compressor☆188Jul 22, 2026Updated last month
- Long read / genome alignment software☆330Dec 16, 2025Updated 8 months ago
- ☆63Sep 15, 2025Updated 11 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆703Updated this week
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Dec 25, 2021Updated 4 years ago
- Yet another k-mer analyzer☆174Dec 30, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆808May 31, 2026Updated 2 months ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 4 months ago
- Pangenome-based genome inference☆177Aug 18, 2026Updated last week
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Structural Variant Identification Method using Genome Assemblies☆147Sep 16, 2022Updated 3 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆186Jul 21, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- k-mer based assembly evaluation☆354Jul 6, 2026Updated last month
- Pangenome graphs (review article on graph-based pangenomic methods)☆73Apr 15, 2020Updated 6 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57May 29, 2024Updated 2 years ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆226Aug 11, 2026Updated 2 weeks ago
- Fast and frugal disk based k-mer counter☆338Jul 7, 2026Updated last month
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago