maickrau / GraphAlignerLinks
☆279Updated 4 months ago
Alternatives and similar repositories for GraphAligner
Users that are interested in GraphAligner are comparing it to the libraries listed below
Sorting:
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆226Updated last week
- Graphical Fragment Assembly (GFA) Format Specification☆217Updated last year
- Long read / genome alignment software☆311Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆242Updated last year
- Program for aligning DNA sequences, a pairwise aligner.☆232Updated 5 months ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆318Updated 2 months ago
- Jasmine: SV Merging Across Samples☆232Updated 11 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆294Updated last year
- SIMD partial order alignment tool/library☆170Updated 2 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Updated 3 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆306Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆285Updated this week
- ☆270Updated 5 months ago
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆191Updated 7 months ago
- De novo genome assembler for long uncorrected reads☆228Updated 2 years ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆163Updated 7 months ago
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- Structural Variant Identification Method using Long Reads☆179Updated 4 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆181Updated 6 years ago
- A minimap2 frontend for PacBio native data formats☆207Updated 3 weeks ago
- Nanopore data assembler☆162Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆230Updated last year
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- Fast and frugal disk based k-mer counter☆314Updated last week
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Updated 3 years ago
- haplotypic duplication identification tool☆269Updated last month
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 5 months ago
- k-mer based assembly evaluation☆333Updated last year