maickrau / GraphAligner
☆265Updated 2 months ago
Alternatives and similar repositories for GraphAligner:
Users that are interested in GraphAligner are comparing it to the libraries listed below
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆203Updated last week
- SIMD partial order alignment tool/library☆164Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆218Updated 6 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆258Updated last month
- Program for aligning DNA sequences, a pairwise aligner.☆206Updated this week
- Jasmine: SV Merging Across Samples☆203Updated 2 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆296Updated 11 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆245Updated 8 months ago
- Long read based human genomic structural variation detection with cuteSV☆254Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆276Updated 9 months ago
- Fast and accurately polish the genome generated by long reads.☆217Updated last month
- Yet another k-mer analyzer☆127Updated 10 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Updated 2 years ago
- Long read / genome alignment software☆274Updated 3 months ago
- Toolset for SV simulation, comparison and filtering☆371Updated last year
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆148Updated last month
- Graphical Fragment Assembly (GFA) Format Specification☆205Updated 6 months ago
- A tool for somatic structural variant calling using long reads☆115Updated this week
- A minimap2 frontend for PacBio native data formats☆181Updated 2 months ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆200Updated 2 years ago
- Graph realignment tools for structural variants☆156Updated 2 years ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆116Updated 11 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- a long read simulator that can imitate many types of read problems☆201Updated 6 months ago
- Nanopore data assembler☆143Updated 2 years ago
- Structural variation and indel detection by local assembly☆240Updated 3 months ago
- A fast approximate aligner for long DNA sequences☆279Updated 4 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆180Updated 5 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆202Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆157Updated last year