maickrau / GraphAligner
☆268Updated 3 months ago
Alternatives and similar repositories for GraphAligner:
Users that are interested in GraphAligner are comparing it to the libraries listed below
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆204Updated last month
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆223Updated 7 months ago
- Long read / genome alignment software☆279Updated 4 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆269Updated this week
- Toolset for SV simulation, comparison and filtering☆374Updated last year
- a long read simulator that can imitate many types of read problems☆208Updated 8 months ago
- Jasmine: SV Merging Across Samples☆208Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆279Updated 10 months ago
- SIMD partial order alignment tool/library☆166Updated last year
- Graphical Fragment Assembly (GFA) Format Specification☆206Updated 7 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 5 months ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆140Updated last year
- Nanopore data assembler☆146Updated 3 years ago
- Fast and accurately polish the genome generated by long reads.☆219Updated 2 months ago
- Yet another k-mer analyzer☆132Updated 11 months ago
- k-mer based assembly evaluation☆305Updated 8 months ago
- A minimap2 frontend for PacBio native data formats☆189Updated last month
- Program for aligning DNA sequences, a pairwise aligner.☆216Updated 3 weeks ago
- Ultra-fast de novo assembler using long noisy reads☆134Updated 4 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆197Updated last month
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆148Updated 2 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 10 months ago
- A fast K-mer counter for high-fidelity shotgun datasets☆124Updated last month
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆200Updated 3 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆262Updated last month
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆248Updated 9 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆297Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆118Updated last year