tseemann / snippyLinks
Rapid haploid variant calling and core genome alignment
☆560Updated last month
Alternatives and similar repositories for snippy
Users that are interested in snippy are comparing it to the libraries listed below
Sorting:
- Genome assembly evaluation tool☆489Updated last year
- Mass screening of contigs for antimicrobial and virulence genes☆468Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆591Updated last week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆401Updated 7 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆548Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆443Updated 2 months ago
- Rapid large-scale prokaryote pan genome analysis☆363Updated 2 months ago
- adapter trimmer for Oxford Nanopore reads☆379Updated last year
- Sequence correction provided by ONT Research☆491Updated last month
- Plotting scripts for long read sequencing data☆524Updated last month
- Eukaryotic Genome Annotation Pipeline☆375Updated this week
- hybrid assembly pipeline for bacterial genomes☆631Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆374Updated 3 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆454Updated 2 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆889Updated 8 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆401Updated 3 weeks ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆362Updated 5 months ago
- Mummer alignment tool☆544Updated 11 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆494Updated 3 weeks ago
- NCBI Prokaryotic Genome Annotation Pipeline☆363Updated 2 months ago
- A complete pipeline for metagenomic analysis☆441Updated 3 weeks ago
- quality filtering tool for long reads☆381Updated 4 months ago
- 🌈 Interactive analysis of metagenomics data☆438Updated 4 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆244Updated 4 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆717Updated 9 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆391Updated last month
- The second version of the Kraken taxonomic sequence classification system☆861Updated 2 weeks ago
- Fast Whole-Genome Similarity (ANI) Estimation☆446Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆455Updated last week
- Finds SNP sites from a multi-FASTA alignment file☆272Updated 5 years ago