Rapid haploid variant calling and core genome alignment
☆593Dec 12, 2025Updated 9 months ago
Alternatives and similar repositories for snippy
Users that are interested in snippy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mass screening of contigs for antimicrobial and virulence genes☆512Jul 17, 2026Updated 2 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆268Jun 11, 2026Updated 3 months ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆224Aug 27, 2025Updated last year
- hybrid assembly pipeline for bacterial genomes☆653Jul 29, 2026Updated last month
- Rapid prokaryotic genome annotation☆995Jan 6, 2026Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scan contig files against PubMLST typing schemes☆302Jun 17, 2026Updated 3 months ago
- "Reads to report" for public health and clinical microbiology☆145Dec 9, 2025Updated 9 months ago
- Rapid large-scale prokaryote pan genome analysis☆380Nov 3, 2025Updated 10 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆157Dec 31, 2025Updated 8 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆681Aug 7, 2026Updated last month
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 2 years ago
- An updated pipeline for pangenome investigation☆377Jul 2, 2026Updated 2 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆348Jul 24, 2026Updated last month
- Pan-genome wide association studies☆225May 29, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Finds SNP sites from a multi-FASTA alignment file☆280Dec 16, 2020Updated 5 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆391Aug 31, 2026Updated 3 weeks ago
- SEER, reimplemented in python 🐍🔮☆138Jul 23, 2026Updated last month
- SPAdes Genome Assembler☆960Sep 9, 2026Updated last week
- Fast Whole-Genome Similarity (ANI) Estimation☆482Sep 14, 2026Updated last week
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 8 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆679Jul 7, 2026Updated 2 months ago
- BSR-Based Allele Calling Algorithm☆151Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆38Apr 14, 2022Updated 4 years ago
- A flexible pipeline for complete analysis of bacterial genomes☆522Aug 5, 2026Updated last month
- A pipeline for running AMRfinderPlus and collating results into functional classes☆102Sep 9, 2026Updated 2 weeks ago
- Create a tree using Mash distances☆190Oct 24, 2023Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆66Jun 16, 2025Updated last year
- Short Read Sequence Typing for Bacterial Pathogens☆150Jun 20, 2021Updated 5 years ago
- SKESA assembler☆127Oct 11, 2024Updated last year
- NCBI Prokaryotic Genome Annotation Pipeline☆390Aug 19, 2026Updated last month
- A tool to circularize genome assemblies☆259Apr 6, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆184Apr 16, 2025Updated last year
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆130Aug 6, 2026Updated last month
- quality filtering tool for long reads☆416Sep 17, 2025Updated last year
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Build a partitioned pangenome graph from microbial genomes☆313Updated this week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆411Mar 2, 2026Updated 6 months ago