Ultra-fast and memory-efficient (meta-)genome assembler
☆731Oct 28, 2025Updated last year
Alternatives and similar repositories for megahit
Users that are interested in megahit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SPAdes Genome Assembler☆972Oct 22, 2026Updated last week
- The second version of the Kraken taxonomic sequence classification system☆950Updated this week
- Rapid prokaryotic genome annotation☆998Jan 6, 2026Updated 9 months ago
- Next generation sequencing reads de novo assembler.☆241Sep 20, 2025Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆482Oct 9, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆629Oct 20, 2026Updated 2 weeks ago
- Genome assembly evaluation tool☆522Jun 10, 2026Updated 4 months ago
- Prodigal Gene Prediction Software☆553Jan 23, 2024Updated 2 years ago
- Read alignment statistics for metagenomics☆411Oct 27, 2026Updated last week
- Classifier for metagenomic sequences☆281Apr 15, 2026Updated 6 months ago
- Clustering cONtigs with COverage and ComposiTion☆140Mar 6, 2020Updated 6 years ago
- Accelerated BLAST compatible local sequence aligner.☆1,334Oct 28, 2026Updated last week
- DAS Tool☆178Oct 9, 2026Updated 3 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆413Mar 2, 2026Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- hybrid assembly pipeline for bacterial genomes☆656Jul 29, 2026Updated 3 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆679Jul 7, 2026Updated 3 months ago
- ☆133Jul 9, 2023Updated 3 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆301Nov 28, 2024Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆955Apr 3, 2026Updated 7 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆429Oct 13, 2026Updated 3 weeks ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,458Oct 7, 2026Updated 3 weeks ago
- Fast genome-wide functional annotation through orthology assignment☆803Aug 13, 2026Updated 2 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆486Sep 14, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Variational autoencoder for metagenomic binning☆335Apr 27, 2026Updated 6 months ago
- 🌈 Interactive analysis of metagenomics data☆456Sep 17, 2025Updated last year
- Rapid comparison and dereplication of genomes☆360Oct 9, 2026Updated 3 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆283Mar 20, 2025Updated last year
- An analysis and visualization platform for 'omics data☆545Updated this week
- Fast genome and metagenome distance estimation using MinHash☆457Sep 19, 2025Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆358Mar 16, 2026Updated 7 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆236Updated this week
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆307Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆559Updated this week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,605Oct 27, 2026Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆692Oct 11, 2026Updated 3 weeks ago
- Scripts to download genomes from the NCBI FTP servers☆1,092Apr 7, 2026Updated 6 months ago
- geNomad: Identification of mobile genetic elements☆342Oct 14, 2026Updated 3 weeks ago
- Rapid large-scale prokaryote pan genome analysis☆381Nov 3, 2025Updated last year
- Mummer alignment tool☆579Feb 4, 2025Updated last year