voutcn / megahitView external linksLinks
Ultra-fast and memory-efficient (meta-)genome assembler
☆693Oct 28, 2025Updated 3 months ago
Alternatives and similar repositories for megahit
Users that are interested in megahit are comparing it to the libraries listed below
Sorting:
- SPAdes Genome Assembler☆905Feb 2, 2026Updated last week
- The second version of the Kraken taxonomic sequence classification system☆868Jan 30, 2026Updated 2 weeks ago
- Rapid prokaryotic genome annotation☆955Jan 6, 2026Updated last month
- Next generation sequencing reads de novo assembler.☆239Sep 20, 2025Updated 4 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆459Jul 28, 2023Updated 2 years ago
- Genome assembly evaluation tool☆494Nov 14, 2024Updated last year
- Prodigal Gene Prediction Software☆524Jan 23, 2024Updated 2 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆574Updated this week
- Accelerated BLAST compatible local sequence aligner.☆1,239Feb 7, 2026Updated last week
- hybrid assembly pipeline for bacterial genomes☆632Jul 25, 2024Updated last year
- Fast genome-wide functional annotation through orthology assignment☆700Jun 18, 2025Updated 7 months ago
- Read alignment statistics for metagenomics☆387Jan 16, 2026Updated 3 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆666Dec 3, 2022Updated 3 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆279Nov 28, 2024Updated last year
- 🌈 Interactive analysis of metagenomics data☆442Sep 17, 2025Updated 4 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,283Jan 22, 2026Updated 3 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆401Jun 12, 2025Updated 8 months ago
- Classifier for metagenomic sequences☆270Jun 20, 2025Updated 7 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆224Jan 20, 2026Updated 3 weeks ago
- Clustering cONtigs with COverage and ComposiTion☆137Mar 6, 2020Updated 5 years ago
- ☆132Jul 9, 2023Updated 2 years ago
- Variational autoencoder for metagenomic binning☆317Feb 2, 2026Updated last week
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆391Dec 13, 2025Updated 2 months ago
- Fast genome and metagenome distance estimation using MinHash☆434Sep 19, 2025Updated 4 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆447Dec 16, 2025Updated last month
- De novo assembler for single molecule sequencing reads using repeat graphs☆903May 2, 2025Updated 9 months ago
- Interactively explore metagenomes and more from a web browser.☆493Dec 22, 2021Updated 4 years ago
- DAS Tool☆169May 2, 2024Updated last year
- Mummer alignment tool☆548Feb 4, 2025Updated last year
- Rapid large-scale prokaryote pan genome analysis☆369Nov 3, 2025Updated 3 months ago
- An analysis and visualization platform for 'omics data☆504Updated this week
- Rapid comparison and dereplication of genomes☆326Nov 10, 2025Updated 3 months ago
- A complete pipeline for metagenomic analysis☆440Jan 21, 2026Updated 3 weeks ago
- Scripts to download genomes from the NCBI FTP servers☆1,058Jul 28, 2025Updated 6 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆298Apr 25, 2025Updated 9 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆366Aug 1, 2025Updated 6 months ago
- Versatile open-source tool for microbiome analysis☆737Jan 19, 2026Updated 3 weeks ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,509Updated this week
- ATLAS - Three commands to start analyzing your metagenome data☆402Nov 28, 2025Updated 2 months ago