Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
☆665Aug 7, 2026Updated last week
Alternatives and similar repositories for bakta
Users that are interested in bakta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated last month
- An updated pipeline for pangenome investigation☆369Jul 2, 2026Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆347Jul 24, 2026Updated 3 weeks ago
- hybrid assembly pipeline for bacterial genomes☆650Jul 29, 2026Updated 2 weeks ago
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Mass screening of contigs for antimicrobial and virulence genes☆507Jul 17, 2026Updated 3 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆260May 13, 2026Updated 3 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆522Aug 5, 2026Updated last week
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆383Updated this week
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆275Mar 20, 2025Updated last year
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 4 months ago
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆316Feb 3, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool for generating consensus long-read assemblies for bacterial genomes☆236Updated this week
- Gene cluster comparison figure generator☆653Dec 22, 2025Updated 7 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆154Jul 24, 2026Updated 3 weeks ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆222Updated this week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆617May 20, 2026Updated 2 months ago
- a short-read polishing tool for long-read assemblies☆224Jul 28, 2026Updated 2 weeks ago
- Build a partitioned pangenome graph from microbial genomes☆308Updated this week
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆109Jan 22, 2026Updated 6 months ago
- Rapid prokaryotic genome annotation☆992Jan 6, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A hybrid assembly and MAG recovery pipeline (and more!)☆116Aug 5, 2026Updated last week
- Rapid determination of appropriate reference genomes.☆102Jan 22, 2025Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆89Jul 7, 2026Updated last month
- Rapid haploid variant calling and core genome alignment☆594Dec 12, 2025Updated 8 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆476Dec 16, 2025Updated 7 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆180Updated this week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Updated this week
- NCBI Prokaryotic Genome Annotation Pipeline☆386Jul 17, 2026Updated 3 weeks ago
- Pipeline for metabolic annotation of microbial genomes☆151Mar 20, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Rapid large-scale prokaryote pan genome analysis☆379Nov 3, 2025Updated 9 months ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆128Aug 6, 2026Updated last week
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆264Jun 11, 2026Updated 2 months ago
- Rapid comparison and dereplication of genomes☆351Jul 16, 2026Updated 3 weeks ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆181Apr 16, 2025Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆428May 20, 2026Updated 2 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆411Mar 2, 2026Updated 5 months ago