Alternatives and similar repositories for bakta

Users that are interested in bakta are comparing it to the libraries listed below

• tseemann / abricate
  Mass screening of contigs for antimicrobial and virulence genes
  ☆455Updated last year
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆368Updated 5 months ago
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆623Updated last year
• bactopia / bactopia
  A flexible pipeline for complete analysis of bacterial genomes
  ☆487Updated last week
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆362Updated 3 weeks ago
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆439Updated 3 weeks ago
• tseemann / snippy
  Rapid haploid variant calling and core genome alignment
  ☆555Updated last year
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆362Updated last month
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆397Updated 5 months ago
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆628Updated last year
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆451Updated 2 years ago
• arpcard / rgi
  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…
  ☆396Updated last week
• ablab / quast
  Genome assembly evaluation tool
  ☆485Updated last year
• biobakery / MetaPhlAn
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
  ☆383Updated 2 weeks ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆437Updated last month
• hyattpd / Prodigal
  Prodigal Gene Prediction Software
  ☆517Updated last year
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆543Updated last year
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆883Updated 7 months ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆358Updated 4 months ago
• shenwei356 / taxonkit
  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
  ☆451Updated 7 months ago
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆514Updated 3 months ago
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆441Updated 4 months ago
• Ecogenomics / GTDBTk
  GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
  ☆555Updated last week
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆677Updated 5 months ago
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆377Updated 2 months ago
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆487Updated 3 months ago
• labgem / PPanGGOLiN
  Build a partitioned pangenome graph from microbial genomes
  ☆287Updated 2 weeks ago
• tseemann / prokka
  Rapid prokaryotic genome annotation
  ☆942Updated last year
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆400Updated last week
• mummer4 / mummer
  Mummer alignment tool
  ☆539Updated 10 months ago