oschwengers / bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
☆452Updated this week
Related projects ⓘ
Alternatives and complementary repositories for bakta
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆348Updated 2 months ago
- Rapid large-scale prokaryote pan genome analysis☆323Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline☆322Updated 3 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆321Updated last year
- A complete pipeline for metagenomic analysis☆382Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆308Updated 5 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆293Updated 3 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆370Updated 10 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆364Updated last week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆396Updated last year
- Fast genome-wide functional annotation through orthology assignment☆572Updated 6 months ago
- Scan contig files against PubMLST typing schemes☆201Updated 2 years ago
- NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org☆246Updated this week
- ATLAS - Three commands to start analyzing your metagenome data☆377Updated last month
- quality filtering tool for long reads☆291Updated last year
- Plotting scripts for long read sequencing data☆435Updated last month
- Rapid haploid variant calling and core genome alignment☆479Updated 4 months ago
- adapter trimmer for Oxford Nanopore reads☆340Updated 6 months ago
- Sequence correction provided by ONT Research☆423Updated last month
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆303Updated 2 weeks ago
- A flexible pipeline for complete analysis of bacterial genomes☆414Updated last week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆255Updated 2 weeks ago
- bioBakery tools for meta'omic profiling☆262Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆213Updated 3 years ago
- NCBI Prokaryotic Genome Annotation Pipeline☆314Updated last week
- De novo assembler for single molecule sequencing reads using repeat graphs☆789Updated 2 months ago
- Gene cluster comparison figure generator☆532Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆473Updated 9 months ago
- Rapid comparison and dereplication of genomes☆263Updated this week
- A genome visualization python package for comparative genomics☆284Updated 3 weeks ago