tseemann / prokkaLinks
Rapid prokaryotic genome annotation
☆942Updated last year
Alternatives and similar repositories for prokka
Users that are interested in prokka are comparing it to the libraries listed below
Sorting:
- Phylogenetic orthology inference for comparative genomics☆819Updated 4 months ago
- Fast genome-wide functional annotation through orthology assignment☆677Updated 5 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆571Updated last week
- SPAdes Genome Assembler☆883Updated this week
- The second version of the Kraken taxonomic sequence classification system☆853Updated 2 weeks ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆883Updated 7 months ago
- hybrid assembly pipeline for bacterial genomes☆628Updated last year
- Gene cluster comparison figure generator☆623Updated last year
- Python library to facilitate genome assembly, annotation, and comparative genomics☆878Updated last week
- Prodigal Gene Prediction Software☆519Updated last year
- Mass screening of contigs for antimicrobial and virulence genes☆460Updated this week
- Rapid haploid variant calling and core genome alignment☆555Updated last year
- Scripts to download genomes from the NCBI FTP servers☆1,051Updated 4 months ago
- Genome assembly evaluation tool☆485Updated last year
- A single molecule sequence assembler for genomes large and small.☆695Updated 3 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆654Updated 3 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆451Updated 2 years ago
- A quality control analysis tool for high throughput sequencing data☆557Updated 2 weeks ago
- Bioinformatics code libraries and scripts☆551Updated 4 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆710Updated 8 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆362Updated 3 weeks ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆451Updated 7 months ago
- Rapid large-scale prokaryote pan genome analysis☆362Updated last month
- A complete pipeline for metagenomic analysis☆439Updated last month
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆555Updated last week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆397Updated 5 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆383Updated 2 weeks ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆439Updated last month
- Trinity RNA-Seq de novo transcriptome assembly☆877Updated 10 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆487Updated last week