a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
☆173Aug 1, 2026Updated last week
Alternatives and similar repositories for BandageNG
Users that are interested in BandageNG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated 3 months ago
- ☆63Sep 15, 2025Updated 10 months ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- A genome completeness evaluation tool based on miniprot☆260Updated this week
- GFA visualizer, GPU-accelerated using Vulkan☆79Aug 2, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Find, circularise and annotate mitogenome from PacBio assemblies☆199May 11, 2025Updated last year
- ☆290Dec 29, 2025Updated 7 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆672Jul 7, 2026Updated last month
- ☆123Jul 17, 2026Updated 3 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆138Updated this week
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆130Jun 18, 2026Updated last month
- Assembled Genomes Compressor☆186Jul 22, 2026Updated 3 weeks ago
- Pairwise whole genome aligner☆243Jul 29, 2026Updated 2 weeks ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆249Jul 23, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 5 months ago
- the pangenome graph builder☆510Jul 24, 2026Updated 3 weeks ago
- De novo assembly from Oxford Nanopore reads.☆89Jun 29, 2026Updated last month
- Constructing a pangenome gene graph☆211Aug 11, 2025Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆409Aug 4, 2026Updated last week
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- ☆59Dec 12, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 4 months ago
- Yet another k-mer analyzer☆175Dec 30, 2025Updated 7 months ago
- ☆102Apr 22, 2024Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Graphical Fragment Assembly (GFA) Format Specification☆221Aug 21, 2024Updated last year
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 3 months ago
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆21Updated this week
- Mumemto: multi-MUM and MEM finding across pangenomes☆134Jul 29, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆42Oct 6, 2025Updated 10 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- implicit pangenome graph☆110Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆352Jul 27, 2026Updated 2 weeks ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 7 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆228May 9, 2026Updated 3 months ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago