GFA-spec / GFA-specLinks
Graphical Fragment Assembly (GFA) Format Specification
☆217Updated last year
Alternatives and similar repositories for GFA-spec
Users that are interested in GFA-spec are comparing it to the libraries listed below
Sorting:
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆244Updated 2 weeks ago
- Long read / genome alignment software☆311Updated 2 weeks ago
- Jasmine: SV Merging Across Samples☆233Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 10 months ago
- ☆282Updated 5 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆234Updated 6 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆233Updated 2 years ago
- software tools for haplotype assembly from sequence data☆226Updated 10 months ago
- Long read based human genomic structural variation detection with cuteSV☆277Updated 3 months ago
- k-mer based assembly evaluation☆334Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- Pairwise whole genome aligner☆223Updated last month
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆168Updated 8 months ago
- Structural Variant Identification Method using Long Reads☆179Updated 4 years ago
- A minimap2 frontend for PacBio native data formats☆207Updated last month
- Nanopore data assembler☆162Updated 3 years ago
- diploid SNV caller for error-prone reads☆204Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆209Updated 3 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆319Updated 3 months ago
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Updated 3 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆197Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Updated 3 years ago
- Toolset for SV simulation, comparison and filtering☆406Updated 2 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- VGP repository for the genome assembly working group☆194Updated 7 months ago
- De novo genome assembler for long uncorrected reads☆229Updated 2 years ago
- Graph realignment tools for structural variants☆165Updated 3 years ago