marbl / MashMapLinks
A fast approximate aligner for long DNA sequences
☆286Updated last year
Alternatives and similar repositories for MashMap
Users that are interested in MashMap are comparing it to the libraries listed below
Sorting:
- Long read / genome alignment software☆310Updated last month
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆246Updated last month
- Program for aligning DNA sequences, a pairwise aligner.☆239Updated 7 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- software tools for haplotype assembly from sequence data☆226Updated 11 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆321Updated 3 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆306Updated last year
- Pairwise whole genome aligner☆225Updated last week
- Tandem Repeats Finder: a program to analyze DNA sequences☆198Updated 3 years ago
- Long read based human genomic structural variation detection with cuteSV☆277Updated 3 months ago
- Graphical Fragment Assembly (GFA) Format Specification☆218Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 10 months ago
- Filtering and trimming of long read sequencing data☆212Updated 3 years ago
- An overview of all nanopack tools☆276Updated 2 years ago
- A fast K-mer counter for high-fidelity shotgun datasets☆138Updated 4 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆288Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆235Updated 2 years ago
- SIMD partial order alignment tool/library☆170Updated 3 months ago
- Ultra-fast de novo assembler using long noisy reads☆136Updated 4 years ago
- a long read simulator that can imitate many types of read problems☆263Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Fast and accurately polish the genome generated by long reads.☆239Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 5 months ago
- ☆227Updated last month
- Jasmine: SV Merging Across Samples☆236Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated 11 months ago
- De-Novo Repeat Discovery Tool☆230Updated 5 months ago
- VGP repository for the genome assembly working group☆194Updated 8 months ago
- k-mer based assembly evaluation☆335Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆243Updated 2 years ago