marbl / MashMapLinks
A fast approximate aligner for long DNA sequences
☆284Updated last year
Alternatives and similar repositories for MashMap
Users that are interested in MashMap are comparing it to the libraries listed below
Sorting:
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆239Updated last year
- Long read / genome alignment software☆305Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated last year
- software tools for haplotype assembly from sequence data☆224Updated 9 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆230Updated 5 months ago
- Graphical Fragment Assembly (GFA) Format Specification☆217Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆282Updated 2 weeks ago
- Pairwise whole genome aligner☆214Updated this week
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆230Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆260Updated last year
- Tandem Repeats Finder: a program to analyze DNA sequences☆194Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- A minimap2 frontend for PacBio native data formats☆205Updated this week
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆305Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆314Updated last month
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆283Updated 9 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆240Updated last year
- 3D de novo assembly (3D DNA) pipeline☆218Updated last year
- Hierarchical Alignment Format☆173Updated 2 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆181Updated 6 years ago
- VGP repository for the genome assembly working group☆193Updated 6 months ago
- An overview of all nanopack tools☆272Updated 2 years ago
- k-mer based assembly evaluation☆332Updated last year
- De-Novo Repeat Discovery Tool☆223Updated 3 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- A bioinformatics tool for working with modified bases☆225Updated 2 months ago
- Long read based human genomic structural variation detection with cuteSV☆274Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year