OpenGene / fastpLinks
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
☆2,156Updated last month
Alternatives and similar repositories for fastp
Users that are interested in fastp are comparing it to the libraries listed below
Sorting:
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,349Updated this week
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,087Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,484Updated 2 months ago
- SRA Tools☆1,250Updated this week
- Trinity RNA-Seq de novo transcriptome assembly☆866Updated 6 months ago
- A list of interesting genome browser and genome visualization programs☆999Updated 2 weeks ago
- RNAseq analysis notes from Ming Tang☆1,030Updated 3 years ago
- The next version of bwa-mem☆777Updated last month
- Bioinformatics code libraries and scripts☆542Updated last month
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,453Updated last week
- A quality control analysis tool for high throughput sequencing data☆526Updated 2 weeks ago
- MACS -- Model-based Analysis of ChIP-Seq☆753Updated 3 weeks ago
- Rapid prokaryotic genome annotation☆926Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,018Updated 2 months ago
- Scripts to download genomes from the NCBI FTP servers☆1,026Updated 3 weeks ago
- Phylogenetic orthology inference for comparative genomics☆789Updated last month
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆821Updated last year
- A fast and sensitive gapped read aligner☆734Updated 8 months ago
- SPAdes Genome Assembler☆860Updated this week
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,381Updated 2 years ago
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,766Updated last week
- The second version of the Kraken taxonomic sequence classification system☆815Updated last month
- bedtools - the swiss army knife for genome arithmetic☆995Updated 5 months ago
- ChIP-seq analysis notes from Ming Tang☆815Updated last year
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,641Updated 5 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆846Updated this week
- Graph-based alignment (Hierarchical Graph FM index)☆509Updated 9 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆523Updated 5 months ago
- Fast genome-wide functional annotation through orthology assignment☆645Updated 2 months ago
- Near-optimal RNA-Seq quantification☆696Updated 4 months ago