OpenGene / fastpLinks
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
☆2,220Updated last month
Alternatives and similar repositories for fastp
Users that are interested in fastp are comparing it to the libraries listed below
Sorting:
- Toolkit for processing sequences in FASTA/Q formats☆1,512Updated 5 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,391Updated this week
- Trinity RNA-Seq de novo transcriptome assembly☆876Updated 9 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,137Updated this week
- Rapid prokaryotic genome annotation☆941Updated last year
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,676Updated 7 months ago
- SRA Tools☆1,272Updated this week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,482Updated 2 weeks ago
- Phylogenetic orthology inference for comparative genomics☆813Updated 4 months ago
- Scripts to download genomes from the NCBI FTP servers☆1,046Updated 3 months ago
- RNAseq analysis notes from Ming Tang☆1,050Updated 4 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,072Updated last month
- A fast and sensitive gapped read aligner☆751Updated 2 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆759Updated this week
- ChIP-seq analysis notes from Ming Tang☆830Updated last year
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,800Updated 3 weeks ago
- The next version of bwa-mem☆795Updated last month
- SPAdes Genome Assembler☆877Updated last week
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,401Updated 2 years ago
- A list of interesting genome browser and genome visualization programs☆1,023Updated this week
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆847Updated last year
- bedtools - the swiss army knife for genome arithmetic☆1,007Updated 8 months ago
- A quality control analysis tool for high throughput sequencing data☆552Updated 2 weeks ago
- Bioinformatics code libraries and scripts☆551Updated 3 months ago
- The second version of the Kraken taxonomic sequence classification system☆846Updated last week
- Graph-based alignment (Hierarchical Graph FM index)☆519Updated 2 months ago
- Near-optimal RNA-Seq quantification☆708Updated 7 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆871Updated last week
- De novo assembler for single molecule sequencing reads using repeat graphs☆880Updated 6 months ago
- Fast genome-wide functional annotation through orthology assignment☆669Updated 5 months ago