OpenGene / fastpLinks
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
☆2,121Updated last week
Alternatives and similar repositories for fastp
Users that are interested in fastp are comparing it to the libraries listed below
Sorting:
- Toolkit for processing sequences in FASTA/Q formats☆1,476Updated last month
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,327Updated this week
- Trinity RNA-Seq de novo transcriptome assembly☆862Updated 5 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,060Updated last week
- SRA Tools☆1,234Updated this week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆1,996Updated last month
- MACS -- Model-based Analysis of ChIP-Seq☆748Updated 3 months ago
- Rapid prokaryotic genome annotation☆913Updated last year
- SPAdes Genome Assembler☆850Updated last week
- Phylogenetic orthology inference for comparative genomics☆782Updated 8 months ago
- A quality control analysis tool for high throughput sequencing data☆517Updated last year
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆812Updated last year
- ChIP-seq analysis notes from Ming Tang☆809Updated 11 months ago
- The second version of the Kraken taxonomic sequence classification system☆805Updated last week
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,630Updated 3 months ago
- Bioinformatics code libraries and scripts☆532Updated 5 months ago
- A fast and sensitive gapped read aligner☆723Updated 7 months ago
- A list of interesting genome browser and genome visualization programs☆978Updated last week
- The next version of bwa-mem☆764Updated 2 weeks ago
- Scripts to download genomes from the NCBI FTP servers☆1,021Updated 11 months ago
- RNAseq analysis notes from Ming Tang☆1,016Updated 3 years ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,436Updated 2 months ago
- Fast genome-wide functional annotation through orthology assignment☆633Updated 3 weeks ago
- bedtools - the swiss army knife for genome arithmetic☆985Updated 4 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆835Updated 2 weeks ago
- Accelerated BLAST compatible local sequence aligner.☆1,161Updated 2 weeks ago
- Near-optimal RNA-Seq quantification☆693Updated 3 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆503Updated 8 months ago
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,745Updated this week
- A universal enrichment tool for interpreting omics data☆1,101Updated 2 months ago