ggonnella / gfavizLinks
Graphical interactive tool for the visualization of sequence graphs in GFA format.
☆71Updated 6 years ago
Alternatives and similar repositories for gfaviz
Users that are interested in gfaviz are comparing it to the libraries listed below
Sorting:
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆108Updated last month
- ☆48Updated last year
- Genome Pair Rapid Dotter☆67Updated 3 years ago
- TGS scaffolding☆46Updated 3 years ago
- ☆64Updated last month
- Identification of transposable element families from pangenome polymorphisms☆53Updated 2 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Call select base modifications in PacBio HiFi reads☆13Updated 7 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- ☆36Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- Statistics and analysis for variation graphs☆45Updated 8 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- ☆77Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Ploidy agnostic phasing pipeline and algorithm☆46Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆39Updated 10 months ago
- ☆30Updated 3 months ago
- ☆81Updated 5 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 9 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A program for assessing the T2T genome continuity☆83Updated last week