ggonnella / gfavizLinks
Graphical interactive tool for the visualization of sequence graphs in GFA format.
☆72Updated 6 years ago
Alternatives and similar repositories for gfaviz
Users that are interested in gfaviz are comparing it to the libraries listed below
Sorting:
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Genome Pair Rapid Dotter☆67Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆51Updated last year
- ☆68Updated last week
- TGS scaffolding☆47Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Statistics and analysis for variation graphs☆47Updated last year
- ☆39Updated 2 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- finshingTool☆54Updated 9 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆127Updated last month
- Call select base modifications in PacBio HiFi reads☆15Updated 2 months ago
- ☆46Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 months ago
- VNTR annotation using motif selection☆39Updated this week
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆86Updated 2 months ago
- ☆78Updated 5 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 2 months ago
- ☆38Updated last month
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆35Updated 5 years ago