ggonnella / gfavizLinks
Graphical interactive tool for the visualization of sequence graphs in GFA format.
☆70Updated 6 years ago
Alternatives and similar repositories for gfaviz
Users that are interested in gfaviz are comparing it to the libraries listed below
Sorting:
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆37Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆111Updated 2 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Identification of transposable element families from pangenome polymorphisms☆53Updated 3 months ago
- ☆48Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 9 months ago
- TGS scaffolding☆46Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 months ago
- ☆77Updated 5 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆30Updated 4 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆66Updated 2 weeks ago
- finshingTool☆54Updated 8 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆81Updated 6 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆44Updated 5 months ago
- Genome Pair Rapid Dotter☆66Updated 4 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Updated 2 years ago
- A tool for evaluating long-read de novo assembly results☆43Updated last year
- linearize and simplify variation graphs using blocked partial order alignment☆57Updated last month
- Statistics and analysis for variation graphs☆45Updated 9 months ago