Alternatives and similar repositories for gfaviz:

Users that are interested in gfaviz are comparing it to the libraries listed below

• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆79Updated 2 weeks ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆35Updated 5 months ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 11 months ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated last year
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆39Updated 5 months ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• benedictpaten / marginPhase
  ☆34Updated 5 years ago
• ablab / VerityMap
  ☆34Updated 2 years ago
• PacificBiosciences / apps-scripts
  Miscellaneous scripts for applications of PacBio systems
  ☆27Updated 3 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆45Updated last month
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago
• maickrau / ribotin
  ☆32Updated last week
• davidebolo1993 / VISOR
  VarIant SimulatOR for short, long and linked reads
  ☆48Updated 6 months ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last month
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆95Updated last year
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆66Updated 2 years ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 2 years ago
• GATB / MindTheGap
  MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …
  ☆37Updated 3 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 4 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆48Updated last year
• mcfrith / tandem-genotypes
  ☆48Updated 10 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆33Updated 2 years ago
• shilpagarg / WHdenovo
  ☆47Updated 4 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆36Updated 2 weeks ago