marbl / Mash
Fast genome and metagenome distance estimation using MinHash
☆401Updated last year
Alternatives and similar repositories for Mash:
Users that are interested in Mash are comparing it to the libraries listed below
- Rapid comparison and dereplication of genomes☆280Updated 3 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆355Updated 2 years ago
- Fast Whole-Genome Similarity (ANI) Estimation☆397Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆317Updated 9 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆362Updated 6 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆355Updated last month
- NCBI Prokaryotic Genome Annotation Pipeline☆330Updated this week
- Rapid large-scale prokaryote pan genome analysis☆338Updated 2 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆221Updated 4 years ago
- Genome assembly evaluation tool☆422Updated 4 months ago
- quality filtering tool for long reads☆324Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆304Updated last month
- hybrid assembly pipeline for bacterial genomes☆587Updated 8 months ago
- Scan contig files against PubMLST typing schemes☆220Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 5 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆219Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆492Updated 2 weeks ago
- Classifier for metagenomic sequences☆256Updated 5 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆331Updated last year
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆320Updated last year
- ATLAS - Three commands to start analyzing your metagenome data☆384Updated last week
- Structural variation caller using third generation sequencing☆583Updated 2 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆607Updated 2 years ago
- Mummer alignment tool☆491Updated last month
- Bacterial ribosomal RNA predictor☆238Updated last year
- Plotting scripts for long read sequencing data☆465Updated last month
- ☆337Updated 3 weeks ago
- A comparison of different Oxford Nanopore basecallers☆315Updated 5 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆400Updated 3 months ago
- 🌈 Interactive analysis of metagenomics data☆409Updated 6 months ago