Fast genome and metagenome distance estimation using MinHash
☆445Sep 19, 2025Updated 9 months ago
Alternatives and similar repositories for Mash
Users that are interested in Mash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast Whole-Genome Similarity (ANI) Estimation☆466Dec 16, 2025Updated 6 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆548Jun 22, 2026Updated last week
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- hybrid assembly pipeline for bacterial genomes☆643Jul 25, 2024Updated last year
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Rapid comparison and dereplication of genomes☆347Nov 10, 2025Updated 7 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆410Mar 2, 2026Updated 3 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆370May 22, 2026Updated last month
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- Rapid prokaryotic genome annotation☆985Jan 6, 2026Updated 5 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆155Oct 2, 2025Updated 8 months ago
- Classifier for metagenomic sequences☆275Apr 15, 2026Updated 2 months ago
- Fast and accurate genomic distances using HyperLogLog☆162Jan 19, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆609May 20, 2026Updated last month
- Pan-genome wide association studies☆219May 29, 2024Updated 2 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆672Dec 3, 2022Updated 3 years ago
- Mummer alignment tool☆564Feb 4, 2025Updated last year
- A single molecule sequence assembler for genomes large and small.☆701Jun 18, 2026Updated last week
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆260Jun 11, 2026Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆344Sep 11, 2025Updated 9 months ago
- An updated pipeline for pangenome investigation☆361Jun 2, 2026Updated 3 weeks ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆221Aug 27, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Mar 15, 2021Updated 5 years ago
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- Rapid large-scale prokaryote pan genome analysis☆378Nov 3, 2025Updated 7 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆497Apr 3, 2026Updated 2 months ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆74Apr 1, 2026Updated 2 months ago
- SPAdes Genome Assembler☆947Jun 16, 2026Updated 2 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆656May 15, 2026Updated last month
- A tool for removing redundant genomes from a set of assemblies☆83May 6, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rapid haploid variant calling and core genome alignment☆587Dec 12, 2025Updated 6 months ago
- The second version of the Kraken taxonomic sequence classification system☆913Updated this week
- SKESA assembler☆126Oct 11, 2024Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆940Apr 3, 2026Updated 2 months ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆118Dec 13, 2024Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆298May 9, 2024Updated 2 years ago
- Chromosome-level scaffolding using multiple references☆169Sep 8, 2024Updated last year