marbl / MashLinks
Fast genome and metagenome distance estimation using MinHash
☆434Updated 4 months ago
Alternatives and similar repositories for Mash
Users that are interested in Mash are comparing it to the libraries listed below
Sorting:
- NCBI Prokaryotic Genome Annotation Pipeline☆366Updated this week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆401Updated 7 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆375Updated 3 years ago
- 🌈 Interactive analysis of metagenomics data☆442Updated 4 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆245Updated 4 years ago
- A fast multi-threaded k-mer counter☆529Updated last year
- Sequence correction provided by ONT Research☆499Updated 2 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆446Updated last month
- Genome assembly evaluation tool☆494Updated last year
- Rapid large-scale prokaryote pan genome analysis☆368Updated 3 months ago
- Fast and frugal disk based k-mer counter☆324Updated 3 weeks ago
- hybrid assembly pipeline for bacterial genomes☆633Updated last year
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆352Updated 6 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆390Updated last month
- Mummer alignment tool☆548Updated last year
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆456Updated last month
- Classifier for metagenomic sequences☆270Updated 7 months ago
- ☆347Updated 11 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆336Updated 11 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆403Updated 3 weeks ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆298Updated 9 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆666Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆296Updated last year
- adapter trimmer for Oxford Nanopore reads☆380Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆365Updated 6 months ago
- Eukaryotic Genome Annotation Pipeline☆378Updated 2 weeks ago
- Plotting scripts for long read sequencing data☆528Updated 2 months ago
- quality filtering tool for long reads☆387Updated 4 months ago
- A complete pipeline for metagenomic analysis☆441Updated 2 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆456Updated 2 years ago