marbl / MashLinks
Fast genome and metagenome distance estimation using MinHash
☆426Updated 2 months ago
Alternatives and similar repositories for Mash
Users that are interested in Mash are comparing it to the libraries listed below
Sorting:
- Pilon is an automated genome assembly improvement and variant detection tool☆371Updated 3 years ago
- Genome assembly evaluation tool☆480Updated last year
- NCBI Prokaryotic Genome Annotation Pipeline☆359Updated last week
- Fast Whole-Genome Similarity (ANI) Estimation☆437Updated 3 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆295Updated 6 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆396Updated 5 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆323Updated 8 months ago
- 🌈 Interactive analysis of metagenomics data☆434Updated 2 months ago
- Rapid large-scale prokaryote pan genome analysis☆358Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline☆366Updated 4 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆394Updated 3 weeks ago
- A fast multi-threaded k-mer counter☆519Updated last year
- ☆346Updated 8 months ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆343Updated 4 months ago
- Classifier for metagenomic sequences☆267Updated 5 months ago
- Fast and frugal disk based k-mer counter☆312Updated 2 weeks ago
- Sequence correction provided by ONT Research☆486Updated 3 months ago
- Mummer alignment tool☆535Updated 9 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- Rapid comparison and dereplication of genomes☆315Updated last week
- adapter trimmer for Oxford Nanopore reads☆375Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆448Updated 2 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆240Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆291Updated last year
- Bacterial ribosomal RNA predictor☆261Updated 2 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆450Updated last year
- A tool to circularize genome assemblies☆248Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆357Updated 3 months ago
- hybrid assembly pipeline for bacterial genomes☆625Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆654Updated 2 years ago