Alternatives and similar repositories for spaln

Users that are interested in spaln are comparing it to the libraries listed below

• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆79Updated last week
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆85Updated this week
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆178Updated last week
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆191Updated this week
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆77Updated this week
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆100Updated 3 weeks ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆83Updated this week
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆135Updated last year
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆131Updated 2 weeks ago
• epi2me-labs / wf-basecalling
  ☆46Updated last week
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆101Updated last year
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆168Updated 10 months ago
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆203Updated 2 weeks ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆112Updated 3 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 5 months ago
• nathanweeks / exonerate
  A fork of exonerate: a generic tool for sequence alignment
  ☆70Updated last year
• lh3 / yak
  Yet another k-mer analyzer
  ☆143Updated last year
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆80Updated 7 months ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆112Updated 6 months ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆103Updated 2 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆103Updated 8 months ago
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆78Updated 5 months ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated last year
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆104Updated last year
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆69Updated 2 years ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆118Updated 10 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆152Updated last week
• twolinin / longphase
  ☆117Updated last month
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆105Updated last month
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆109Updated 5 months ago