Alternatives and similar repositories for spaln

Users that are interested in spaln are comparing it to the libraries listed below

• refresh-bio / agc
  Assembled Genomes Compressor
  ☆171Updated 11 months ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆86Updated 3 weeks ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated 2 weeks ago
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆184Updated last week
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆142Updated 2 weeks ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆81Updated last week
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆89Updated last week
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆153Updated last month
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆83Updated 3 weeks ago
• nathanweeks / exonerate
  A fork of exonerate: a generic tool for sequence alignment
  ☆70Updated last year
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆124Updated 2 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆106Updated 2 months ago
• mourisl / centrifuger
  Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.
  ☆75Updated last month
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆115Updated this week
• lh3 / yak
  Yet another k-mer analyzer
  ☆151Updated last month
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆80Updated 9 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆137Updated last year
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆214Updated this week
• kjenike / panagram
  ☆67Updated 2 weeks ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆73Updated 3 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated last month
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆106Updated last year
• daewoooo / SVbyEye
  ☆143Updated 2 weeks ago
• DyogenIBENS / Agora
  Algorithm For Gene Order Reconstruction in Ancestors
  ☆77Updated 3 months ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆96Updated last year
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆115Updated 8 months ago
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆114Updated 6 months ago
• kiranbandi / synvisio
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …
  ☆89Updated last year
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆90Updated last year
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆115Updated last week