ogotoh / spaln
Genome mapping and spliced alignment of cDNA or amino acid sequences
☆102Updated 2 months ago
Alternatives and similar repositories for spaln:
Users that are interested in spaln are comparing it to the libraries listed below
- Dfam Transposable Element Tools Docker container.☆90Updated last month
- a tool for inferring species tree from sequencing reads☆148Updated last month
- FastOMA is a scalable software package to infer orthology relationship.☆74Updated 2 weeks ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- A list of software for pangenomics☆110Updated last week
- accurate LiftOver tool for new genome assemblies☆125Updated 8 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year
- List of genome assembly tools☆65Updated 2 weeks ago
- A local-haplotagging-based small and structural variant caller☆73Updated last week
- Interactive quality assessment of genome assemblies☆98Updated 2 weeks ago
- ☆38Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆114Updated this week
- Read Until client library for Nanopore Sequencing☆104Updated 6 months ago
- Assembly statistic visualisation☆89Updated last year
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆69Updated 2 years ago
- Research release basecalling models and configurations☆110Updated 9 months ago
- source code for EVM☆109Updated 4 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- Pipeline to convert a haploid assembly into diploid☆100Updated 2 months ago
- ☆77Updated 4 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆99Updated last month
- ONT assembly and Illumina polishing pipeline☆91Updated 4 years ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆84Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Assembled Genomes Compressor☆160Updated 4 months ago
- Visualise and analyse nanopore (ONT) raw signals☆114Updated 2 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆122Updated 2 months ago
- ☆81Updated last year
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 4 months ago