Genome mapping and spliced alignment of cDNA or amino acid sequences
☆113Feb 28, 2026Updated 3 months ago
Alternatives and similar repositories for spaln
Users that are interested in spaln are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- Align proteins to genomes with splicing and frameshift☆404Jan 5, 2026Updated 5 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆124Updated this week
- Unzip assembly graphs with Hi-C data and/or long reads.☆28May 7, 2026Updated last month
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 9 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆124Apr 28, 2026Updated last month
- A fast K-mer counter for high-fidelity shotgun datasets☆145Jan 19, 2026Updated 4 months ago
- ☆121Updated this week
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 9 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- A genome completeness evaluation tool based on miniprot☆245Updated this week
- FastOMA is a scalable software package to infer orthology relationship.☆99May 15, 2026Updated last month
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆190May 17, 2024Updated 2 years ago
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- Pairwise whole genome aligner☆239May 19, 2026Updated 3 weeks ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆40Apr 1, 2026Updated 2 months ago
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- This is the standalone version of the EviAnn pipeline☆151May 14, 2026Updated last month
- Fast and accurate coordinate conversion between assemblies☆119Jun 1, 2026Updated 2 weeks ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Find, circularise and annotate mitogenome from PacBio assemblies☆197May 11, 2025Updated last year
- SRF: Satellite Repeat Finder☆105Jan 8, 2024Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 9 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆397Apr 22, 2026Updated last month
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated last month
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆246May 1, 2026Updated last month
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- alignment to variation graph inducer☆160Jun 8, 2026Updated last week
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆18Jan 24, 2026Updated 4 months ago
- Scoring GT/AG sites for improving spliced alignment☆55Nov 10, 2025Updated 7 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- ☆45Dec 11, 2025Updated 6 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 6 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆59Jan 7, 2026Updated 5 months ago
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last month