ogotoh / spalnLinks
Genome mapping and spliced alignment of cDNA or amino acid sequences
☆105Updated last month
Alternatives and similar repositories for spaln
Users that are interested in spaln are comparing it to the libraries listed below
Sorting:
- Variant calling tool for long-read sequencing data☆110Updated 3 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- A list of software for pangenomics☆119Updated this week
- Dfam Transposable Element Tools Docker container.☆95Updated 2 weeks ago
- Pairwise whole genome aligner☆174Updated last month
- ☆113Updated 2 months ago
- accurate LiftOver tool for new genome assemblies☆132Updated 11 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆139Updated 2 weeks ago
- a tool for inferring species tree from sequencing reads☆150Updated 4 months ago
- Interactive quality assessment of genome assemblies☆102Updated 2 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated last month
- Assembly statistic visualisation☆90Updated last year
- List of genome assembly tools☆70Updated 2 weeks ago
- Python programs for processing GFF3 files☆98Updated last year
- A fork of exonerate: a generic tool for sequence alignment☆67Updated last year
- Research release basecalling models and configurations☆113Updated last month
- source code for EVM☆112Updated 7 months ago
- Read Until client library for Nanopore Sequencing☆104Updated 9 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆107Updated this week
- A local-haplotagging-based small and structural variant caller☆78Updated 2 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆58Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆117Updated this week
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- Assembled Genomes Compressor☆167Updated 7 months ago
- Same species annotation lift over pipeline.☆98Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆102Updated 3 weeks ago
- FastOMA is a scalable software package to infer orthology relationship.☆77Updated last week
- ☆42Updated 3 weeks ago
- A fast whole-genome aligner based on de Bruijn graphs☆151Updated last week
- Fast and accurate coordinate conversion between assemblies☆113Updated 3 months ago