JTK -- a regional diploid genome assembler
☆26Apr 22, 2026Updated last week
Alternatives and similar repositories for jtk
Users that are interested in jtk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- Generate interactive dotplot from mummer4 output using plotly☆27Feb 29, 2020Updated 6 years ago
- PECAT, a phased error correct and assembly tool☆63Dec 8, 2025Updated 4 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated last week
- ☆49Mar 19, 2023Updated 3 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 7 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆51Apr 1, 2026Updated last month
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 5 months ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆63Apr 17, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- ☆18Jan 29, 2025Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆17Nov 18, 2024Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆23Updated this week
- ☆39Feb 22, 2023Updated 3 years ago
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 5 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Updated this week
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- A organelle de novo genome assembly toolkit☆76Feb 22, 2025Updated last year
- ☆12Dec 6, 2023Updated 2 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 4 months ago
- Tools for working with agp files☆19Jun 26, 2025Updated 10 months ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- Fast hash function for DNA/RNA sequences☆107Apr 2, 2026Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆83Jan 20, 2026Updated 3 months ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated 2 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- ☆28Mar 30, 2026Updated last month