ban-m / jtk
JTK -- a regional diploid genome assembler
☆24Updated 4 months ago
Alternatives and similar repositories for jtk:
Users that are interested in jtk are comparing it to the libraries listed below
- Generate interactive dotplot from mummer4 output using plotly☆26Updated 5 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Phasing reads with secondary alignments☆17Updated 3 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 5 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Genome Assembly 102☆14Updated last month
- Prefix-renaming FASTA records really fast.☆17Updated 8 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- Extracting paths from assembly graphs☆22Updated 10 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 2 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 8 months ago
- ☆14Updated 10 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 8 months ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated 2 weeks ago
- General purpose utility related to GAF files☆22Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 5 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆19Updated 3 months ago
- convert variation graph alignments to coverage maps over nodes☆23Updated last month
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- PGR-TK: Pangenome Research Tool Kit☆12Updated last week
- Align subreads to ccs reads☆13Updated last year
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 4 months ago
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 4 months ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- Tandem repeat genotyping with long reads☆28Updated 3 weeks ago
- Convert HAL to VG☆21Updated 6 months ago