ban-m / jtkLinks
JTK -- a regional diploid genome assembler
☆25Updated 11 months ago
Alternatives and similar repositories for jtk
Users that are interested in jtk are comparing it to the libraries listed below
Sorting:
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated last month
- Genome Assembly 102☆15Updated 4 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- base-level dotplots from PAF alignments☆26Updated last month
- Phasing reads with secondary alignments☆20Updated 9 months ago
- De Bruijn graph construction for large k.☆17Updated 4 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- ☆25Updated last month
- convert variation graph alignments to coverage maps over nodes☆24Updated 2 months ago
- Long-read aligner to pangenome graphs☆26Updated last year
- Tandem repeat genotyping with long reads☆30Updated 3 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆16Updated this week
- Kmer Analysis of Pileups for Genotyping☆32Updated 2 weeks ago
- ☆16Updated 3 years ago
- ☆17Updated 7 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated 10 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- Prefix-renaming FASTA records really fast.☆16Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated last month
- ☆18Updated last year
- COsine-based SImilarity Genotyper using pangenomes☆21Updated this week
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- ☆28Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆11Updated 3 months ago
- Reference bias measuring toolkit☆18Updated 5 months ago
- PGR-TK: Pangenome Research Tool Kit☆19Updated 6 months ago