JTK -- a regional diploid genome assembler
☆26Apr 22, 2026Updated 2 months ago
Alternatives and similar repositories for jtk
Users that are interested in jtk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- Generate interactive dotplot from mummer4 output using plotly☆27Feb 29, 2020Updated 6 years ago
- PECAT, a phased error correct and assembly tool☆67Dec 8, 2025Updated 7 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 3 months ago
- ☆49Mar 19, 2023Updated 3 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆44Updated this week
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆53Apr 1, 2026Updated 3 months ago
- Hidden Markov Model based Copy number caller☆20Updated this week
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 7 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆43Dec 18, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 8 months ago
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- ☆18Jan 29, 2025Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last week
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 11 months ago
- Error correction of long reads☆16Jan 30, 2026Updated 5 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- A organelle de novo genome assembly toolkit☆81Feb 22, 2025Updated last year
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆39Feb 22, 2023Updated 3 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- ☆28May 12, 2026Updated 2 months ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 7 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated last month
- ☆12Dec 6, 2023Updated 2 years ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Extracting paths from assembly graphs☆24Jun 22, 2026Updated 3 weeks ago
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- Fast hash function for DNA/RNA sequences☆110Jul 3, 2026Updated 2 weeks ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 6 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆87May 27, 2026Updated last month
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Statistics and analysis for variation graphs☆52Dec 17, 2024Updated last year