cschin / peregrine-2021Links
☆59Updated last year
Alternatives and similar repositories for peregrine-2021
Users that are interested in peregrine-2021 are comparing it to the libraries listed below
Sorting:
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆42Updated 2 weeks ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆33Updated 2 weeks ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 weeks ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 4 months ago
- Linear-time de novo Long Read Assembler☆42Updated 6 months ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated 7 months ago
- A local-haplotagging-based small and structural variant caller☆78Updated last week
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last week
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆76Updated 4 months ago
- perSVade: personalized Structural Variation detection☆40Updated 3 weeks ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Creating alignment plots from bam files☆65Updated this week
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated 2 weeks ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆38Updated last week
- Joint structural variant and copy number variant caller for HiFi sequencing data☆59Updated 2 weeks ago
- ☆20Updated 3 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 9 months ago
- expressions on VCFs☆85Updated 3 months ago