☆59Dec 12, 2023Updated 2 years ago
Alternatives and similar repositories for peregrine-2021
Users that are interested in peregrine-2021 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jan 29, 2025Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated last week
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- ☆124Sep 29, 2026Updated 3 weeks ago
- ☆12Updated this week
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 5 months ago
- Enumerating bubbles in pangenome graphs☆16Oct 19, 2026Updated last week
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated 3 weeks ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- ☆15Jun 29, 2021Updated 5 years ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- ☆42May 19, 2025Updated last year
- ☆31Mar 27, 2024Updated 2 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- ☆27Oct 9, 2026Updated 2 weeks ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 5 months ago
- Fast and accurate coordinate conversion between assemblies☆117Updated this week
- ☆45Dec 29, 2025Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- convert PAF format to CHAIN format☆36May 14, 2025Updated last year
- genotype and visualize structural variants in the human pangenome graphs☆16Nov 21, 2025Updated 11 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 6 months ago
- Utilities to manipulate pangenome collections using multi-MUMs☆20Sep 16, 2026Updated last month
- ☆102Apr 22, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆88May 27, 2026Updated 4 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆39Oct 16, 2026Updated last week
- Workflow to visualize pggb graphs in jbrowse☆11Mar 15, 2024Updated 2 years ago
- Extracting paths from assembly graphs☆26Jun 22, 2026Updated 4 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆131Jun 18, 2026Updated 4 months ago
- A pairwise sequence aligner written in Rust☆152May 22, 2026Updated 5 months ago
- Assembled Genomes Compressor (AGC) squeezing 290 GB of Human Pangenome Project assemblies down to <1.5 GB (>190× ratio), with sample and …☆187Updated this week