cschin / peregrine-2021Links
☆59Updated last year
Alternatives and similar repositories for peregrine-2021
Users that are interested in peregrine-2021 are comparing it to the libraries listed below
Sorting:
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated 2 months ago
- ☆44Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last week
- expressions on VCFs☆85Updated 4 months ago
- ☆42Updated 3 weeks ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆35Updated last month
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- Creating alignment plots from bam files☆65Updated this week
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆76Updated 5 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆49Updated 3 weeks ago
- Linear-time de novo Long Read Assembler☆41Updated 7 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- perSVade: personalized Structural Variation detection☆40Updated last month
- A versatile toolkit for k-mers with taxonomic information☆80Updated this week
- ☆20Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated 7 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- MIRA sequence assembler☆29Updated 7 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- implicit pangenome graph☆67Updated 2 weeks ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated 2 months ago
- A local-haplotagging-based small and structural variant caller☆79Updated 2 weeks ago