cschin / peregrine-2021Links
☆58Updated last year
Alternatives and similar repositories for peregrine-2021
Users that are interested in peregrine-2021 are comparing it to the libraries listed below
Sorting:
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆58Updated last year
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆37Updated this week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆50Updated 6 months ago
- expressions on VCFs☆85Updated 5 months ago
- ☆45Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated 2 weeks ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆55Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆40Updated last month
- A local-haplotagging-based small and structural variant caller☆80Updated 3 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Creating alignment plots from bam files☆65Updated this week
- Linear-time de novo Long Read Assembler☆41Updated 7 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆61Updated last week
- ☆19Updated 3 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated 3 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 11 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆42Updated last month
- REINDEER REad Index for abuNDancE quERy☆56Updated 2 months ago
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆66Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆34Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago