Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
☆39Mar 5, 2023Updated 3 years ago
Alternatives and similar repositories for gapless
Users that are interested in gapless are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated 11 months ago
- ☆42May 19, 2025Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆38Jun 6, 2022Updated 4 years ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- ☆16Apr 16, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated 4 months ago
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 3 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 4 years ago
- A comprehensive C++ telomere annotation tool for genome assemblies and reads.☆18Oct 2, 2026Updated last week
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- A program for assessing the T2T genome continuity and completeness☆97Sep 8, 2026Updated last month
- A tool for evaluate long-read de novo assembly results☆52Aug 28, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Yet another Hi-C scaffolding tool☆183Nov 4, 2024Updated last year
- ☆28Mar 23, 2024Updated 2 years ago
- SRF: Satellite Repeat Finder☆110Jan 8, 2024Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Mosaic Genome Assembler☆29Sep 14, 2026Updated 3 weeks ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- ☆29May 12, 2026Updated 4 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Dynamic Elongation of a Genome Assembly Path☆29Jul 27, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- a gap-filling tools of genome in complex region.☆27Dec 30, 2025Updated 9 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆22Jul 26, 2023Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆41Sep 4, 2018Updated 8 years ago
- PECAT, a phased error correct and assembly tool☆68Dec 8, 2025Updated 10 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- A tool for evaluating long-read de novo assembly results☆55Aug 25, 2024Updated 2 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 5 months ago
- ☆21Jul 12, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Ploidy agnostic phasing pipeline and algorithm☆51Jan 3, 2024Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46Sep 19, 2026Updated 3 weeks ago
- ☆29Jul 16, 2022Updated 4 years ago
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 3 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Oct 3, 2026Updated last week