Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
☆39Mar 5, 2023Updated 3 years ago
Alternatives and similar repositories for gapless
Users that are interested in gapless are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated 8 months ago
- ☆42May 19, 2025Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 4 years ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- ☆15Apr 16, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated last month
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 3 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- A comprehensive telomere annotation tool for genome assemblies and graphs.☆16Jul 8, 2026Updated last week
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 4 months ago
- A tool for evaluate long-read de novo assembly results☆51Aug 28, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- ☆26Mar 23, 2024Updated 2 years ago
- SRF: Satellite Repeat Finder☆105Jan 8, 2024Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Mosaic Genome Assembler☆25Updated this week
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- ☆28May 12, 2026Updated 2 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- Dynamic Elongation of a Genome Assembly Path☆26Apr 29, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 6 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆20Jul 26, 2023Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆39Sep 4, 2018Updated 7 years ago
- PECAT, a phased error correct and assembly tool☆67Dec 8, 2025Updated 7 months ago
- A tool for evaluating long-read de novo assembly results☆54Aug 25, 2024Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 2 months ago
- ☆19Jul 12, 2026Updated last week
- Ploidy agnostic phasing pipeline and algorithm☆50Jan 3, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- ☆29Jul 16, 2022Updated 4 years ago
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 4 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Nov 9, 2025Updated 8 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago