schmeing / gaplessLinks
Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
☆37Updated 2 years ago
Alternatives and similar repositories for gapless
Users that are interested in gapless are comparing it to the libraries listed below
Sorting:
- A genome assembly assessment pipeline.☆37Updated last year
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆29Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Genome Annotation Pipeline☆36Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 6 months ago
- ☆31Updated 5 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 9 months ago
- ☆41Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago
- Draw a dot plot from a paf alignment☆34Updated last week
- HELIANO is a software for detection and classification of Helitron-like elements.☆30Updated 2 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Domain based annotation of transposable elements☆20Updated 3 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 7 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 7 months ago
- A tool for evaluating long-read de novo assembly results☆39Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆29Updated last week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- ☆27Updated 4 months ago
- ☆30Updated 7 months ago
- ☆37Updated last year
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- ☆32Updated 4 years ago
- ☆40Updated 2 years ago
- Identification of transposable element families from pangenome polymorphisms☆53Updated 2 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 11 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago