A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation.
☆121Feb 12, 2026Updated 2 months ago
Alternatives and similar repositories for gfastats
Users that are interested in gfastats are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A genome completeness evaluation tool based on miniprot☆238Sep 18, 2025Updated 7 months ago
- Yet another Hi-C scaffolding tool☆178Nov 4, 2024Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆194May 11, 2025Updated 11 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆563Feb 14, 2024Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆387Apr 10, 2026Updated last week
- Identify and find telomeres, or telomeric repeats in a genome.☆164Nov 24, 2025Updated 4 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆215Mar 20, 2026Updated 3 weeks ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆112Feb 28, 2026Updated last month
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 10 months ago
- A fast K-mer counter for high-fidelity shotgun datasets☆142Jan 19, 2026Updated 2 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆50Apr 1, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- haplotypic duplication identification tool☆280Oct 30, 2025Updated 5 months ago
- SRF: Satellite Repeat Finder☆102Jan 8, 2024Updated 2 years ago
- a short-read polishing tool for long-read assemblies☆212Sep 19, 2025Updated 7 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆107Jul 23, 2024Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- VGP repository for the genome assembly working group☆193Mar 31, 2026Updated 2 weeks ago
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆114Sep 2, 2025Updated 7 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆126Mar 20, 2026Updated 3 weeks ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆26Mar 27, 2026Updated 3 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆344Apr 7, 2025Updated last year
- implicit pangenome graph☆100Updated this week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆160Apr 10, 2026Updated last week
- k-mer based assembly evaluation☆340Jun 28, 2024Updated last year
- ☆237Jan 24, 2025Updated last year
- An accurate GFF3/GTF lift over pipeline☆532Aug 1, 2023Updated 2 years ago
- ☆18Jan 29, 2025Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆59Dec 12, 2023Updated 2 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆241Feb 10, 2026Updated 2 months ago
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated last year
- Foreign Contamination Screening caller scripts and documentation☆162Mar 18, 2025Updated last year
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 4 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 3 months ago