Alternatives and similar repositories for gfastats:

Users that are interested in gfastats are comparing it to the libraries listed below

• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated last month
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆98Updated last week
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆86Updated 7 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆105Updated 2 years ago
• marbl / ModDotPlot
  ☆137Updated this week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆142Updated this week
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆99Updated 11 months ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆129Updated this week
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆91Updated last month
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆176Updated 2 weeks ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆74Updated 4 years ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 5 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆112Updated 8 months ago
• daewoooo / SVbyEye
  ☆76Updated 3 weeks ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 6 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆112Updated 3 months ago
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆103Updated 2 weeks ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆96Updated last year
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆194Updated last week
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆40Updated 3 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆183Updated 8 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆106Updated 2 weeks ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 4 months ago
• qjiangzhao / TEtrimmer
  TEtrimmer: a novel tool to automate manual curation of transposable elements
  ☆66Updated last week
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆142Updated last month
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆145Updated 2 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆110Updated 3 months ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆132Updated 3 weeks ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago