vgl-hub / gfastats
A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation.
☆101Updated 2 months ago
Alternatives and similar repositories for gfastats:
Users that are interested in gfastats are comparing it to the libraries listed below
- Structural Variant Identification Method using Genome Assemblies☆113Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆87Updated 9 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 7 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆102Updated last month
- Pipeline to convert a haploid assembly into diploid☆100Updated 3 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated last year
- Synteny Imager☆62Updated 8 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆146Updated 3 months ago
- ☆92Updated this week
- Make colorful identity heatmaps of genomic sequence☆114Updated 11 months ago
- Reference-free profiling of polyploid genomes☆115Updated 10 months ago
- A tool for Racon polishing of miniasm assemblies☆74Updated 4 years ago
- High-precision TE Annotator☆117Updated last week
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆95Updated 3 months ago
- Interactive quality assessment of genome assemblies☆99Updated last month
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆70Updated last week
- Mapping pipeline for data generated using Arima-HiC☆76Updated 11 months ago
- Phased assembly variant caller☆112Updated 5 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- source code for EVM☆109Updated 5 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆181Updated 2 months ago
- Pangenome-based genome inference☆127Updated 3 weeks ago
- A list of software for pangenomics☆111Updated this week
- De novo assembly from Oxford Nanopore reads.☆83Updated last week
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆68Updated last month
- Identify and find telomeres, or telomeric repeats in a genome.☆126Updated last month
- Dfam Transposable Element Tools Docker container.☆91Updated this week
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆102Updated last year