Alternatives and similar repositories for gfastats

Users that are interested in gfastats are comparing it to the libraries listed below

• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆127Updated 3 years ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆106Updated 2 months ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆114Updated this week
• tolkit / telomeric-identifier
  Identify and find telomeres, or telomeric repeats in a genome.
  ☆148Updated 4 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆106Updated 9 months ago
• qjiangzhao / TEtrimmer
  TEtrimmer: a novel tool to automate manual curation of transposable elements
  ☆106Updated this week
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆114Updated 6 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆111Updated 2 months ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆151Updated last month
• daewoooo / SVbyEye
  ☆142Updated 2 weeks ago
• AntonBankevich / LJA
  ☆118Updated last month
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆96Updated last year
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆75Updated 4 years ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆190Updated 6 months ago
• harvardinformatics / snpArcher
  Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
  ☆84Updated 2 months ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆142Updated 2 weeks ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆153Updated 4 months ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆78Updated 2 months ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆100Updated 9 months ago
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆125Updated last year
• mobinasri / flagger
  Evaluating genome assemblies
  ☆109Updated 2 months ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆81Updated last year
• kjenike / panagram
  ☆67Updated 2 weeks ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆85Updated 3 weeks ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆99Updated last year
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆147Updated 4 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆48Updated this week
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆137Updated 3 weeks ago
• paoloshasta / shasta
  De novo assembly from Oxford Nanopore reads.
  ☆86Updated this week