Alternatives and similar repositories for gfastats

Users that are interested in gfastats are comparing it to the libraries listed below

• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆93Updated last year
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆104Updated last month
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆124Updated 3 years ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆111Updated last month
• qjiangzhao / TEtrimmer
  TEtrimmer: a novel tool to automate manual curation of transposable elements
  ☆97Updated last week
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆103Updated 8 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆188Updated 4 months ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆77Updated last month
• daewoooo / SVbyEye
  ☆141Updated 5 months ago
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆109Updated 5 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆111Updated last month
• AntonBankevich / LJA
  ☆117Updated 3 weeks ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆126Updated 3 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆131Updated 2 weeks ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆97Updated last year
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆82Updated last month
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆121Updated last year
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆152Updated 3 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆131Updated 3 weeks ago
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆52Updated 10 months ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆99Updated 8 months ago
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆46Updated 7 months ago
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆86Updated 10 months ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆143Updated last year
• tolkit / telomeric-identifier
  Identify and find telomeres, or telomeric repeats in a genome.
  ☆145Updated 3 months ago
• mobinasri / flagger
  Evaluating genome assemblies
  ☆105Updated 3 weeks ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆48Updated 10 months ago
• twolinin / longphase
  ☆117Updated last month
• rhysf / Synima
  Synteny Imager
  ☆64Updated 2 months ago