Alternatives and similar repositories for gfastats

Users that are interested in gfastats are comparing it to the libraries listed below

• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆118Updated 2 years ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆76Updated 3 weeks ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆150Updated 4 months ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆110Updated last week
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 8 months ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆130Updated 3 months ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆90Updated 11 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 5 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆100Updated 3 weeks ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆97Updated 4 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆104Updated last year
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆100Updated last month
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆117Updated 2 weeks ago
• rhysf / Synima
  Synteny Imager
  ☆62Updated 9 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆119Updated 6 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆156Updated 3 years ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆190Updated 3 weeks ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆138Updated 4 months ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆78Updated last month
• tolkit / telomeric-identifier
  Identify and find telomeres, or telomeric repeats in a genome.
  ☆130Updated 2 months ago
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆134Updated last month
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆112Updated 6 months ago
• twolinin / longphase
  ☆112Updated last month
• mobinasri / flagger
  Evaluating genome assemblies
  ☆97Updated this week
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆183Updated last month
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆41Updated 7 months ago
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆100Updated last year
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆80Updated 7 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 2 months ago