ekg / pafplot
base-level dotplots from PAF alignments
☆23Updated 2 years ago
Alternatives and similar repositories for pafplot:
Users that are interested in pafplot are comparing it to the libraries listed below
- ☆17Updated 3 weeks ago
- convert PAF format to CHAIN format☆27Updated 2 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆36Updated 4 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Phasing reads with secondary alignments☆17Updated 2 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 5 months ago
- ☆15Updated 2 weeks ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 3 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆21Updated 3 years ago
- Extracting paths from assembly graphs☆22Updated 9 months ago
- Utilities to detect and profile `het-kmers`☆11Updated 6 months ago
- Standalone tool and library allowing to work with barcoded linked-reads☆12Updated 2 months ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 8 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆12Updated this week
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 4 months ago
- Genome Assembly 102☆14Updated last month
- convert variation graph alignments to coverage maps over nodes☆23Updated 3 weeks ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 2 months ago
- Align subreads to ccs reads☆13Updated last year
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Pangenome Graph Variation Format (PGVF)☆18Updated 4 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 8 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 5 months ago
- ☆17Updated this week
- ☆16Updated 2 months ago