ekg / pafplot
base-level dotplots from PAF alignments
☆23Updated 2 years ago
Alternatives and similar repositories for pafplot:
Users that are interested in pafplot are comparing it to the libraries listed below
- ☆17Updated 2 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 6 months ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 5 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Extracts subgraphs or components from a graph in GFA format☆23Updated 4 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆37Updated 5 months ago
- Phasing reads with secondary alignments☆17Updated 4 months ago
- ☆18Updated 3 months ago
- ☆15Updated 2 weeks ago
- Genotyping of copy number sensitive allele-specific haplotypes☆15Updated last month
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated last week
- Genome Assembly 102☆14Updated 2 months ago
- Extracting paths from assembly graphs☆22Updated 11 months ago
- convert variation graph alignments to coverage maps over nodes☆23Updated 2 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 9 months ago
- convert CHAIN format to PAF format☆14Updated 3 months ago
- convert PAF format to CHAIN format☆28Updated 3 months ago
- Pangenome Graph Variation Format (PGVF)☆18Updated 4 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Updated last year
- ☆18Updated 3 weeks ago
- Align subreads to ccs reads☆13Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 9 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆11Updated 10 months ago
- ☆15Updated last year
- Rust bindings to the wavefront algorithm C implementation☆18Updated 2 years ago
- ☆11Updated 2 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago