ekg / pafplotLinks
base-level dotplots from PAF alignments
☆23Updated 2 years ago
Alternatives and similar repositories for pafplot
Users that are interested in pafplot are comparing it to the libraries listed below
Sorting:
- ☆17Updated 4 months ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 7 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 6 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 8 months ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated last month
- Genotyping of copy number sensitive allele-specific haplotypes☆15Updated 2 weeks ago
- Phasing reads with secondary alignments☆18Updated 6 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 11 months ago
- Standalone tool and library allowing to work with barcoded linked-reads☆12Updated 5 months ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 11 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Benchmark structural variant calls against a reference set☆17Updated 7 months ago
- Pangenome Graph Variation Format (PGVF)☆19Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- ☆16Updated 2 years ago
- Genome Assembly 102☆13Updated last month
- ☆21Updated 2 weeks ago
- Efficient indexing and querying of annotations in a pangenome graph☆9Updated 7 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last week
- convert variation graph alignments to coverage maps over nodes☆24Updated 4 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Updated 2 months ago
- Prefix-renaming FASTA records really fast.☆17Updated 11 months ago
- ☆24Updated 6 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- ☆12Updated last month
- split a FASTA sequence file into shorter sequences☆10Updated 4 years ago