FastOMA is a scalable software package to infer orthology relationship.
☆102Aug 28, 2026Updated this week
Alternatives and similar repositories for FastOMA
Users that are interested in FastOMA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆93Jul 31, 2026Updated 3 weeks ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆23Aug 9, 2026Updated 3 weeks ago
- This is the standalone version of the EviAnn pipeline☆183Aug 11, 2026Updated 2 weeks ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 6 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆211Nov 23, 2025Updated 9 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆32Mar 3, 2026Updated 5 months ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆259Jun 25, 2026Updated 2 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 4 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆114Jul 11, 2026Updated last month
- Detecting multi-genome synteny using minimizer graph mapping☆115Aug 20, 2026Updated last week
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 6 months ago
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 7 months ago
- A genome completeness evaluation tool based on miniprot☆262Aug 17, 2026Updated last week
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆63May 17, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a tool for inferring species tree from sequencing reads☆161May 19, 2026Updated 3 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Phyling: phylogenetic inference from annotated genomes☆32Jul 27, 2026Updated last month
- Using Deep Learning to predict gene annotations☆304Jul 22, 2026Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated last month
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆130Jun 18, 2026Updated 2 months ago
- Phylogenetic orthology inference for comparative genomics☆170Updated this week
- A rapid and low-memory multiple-genome aligner for closely related genomes☆25Sep 3, 2025Updated 11 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Jul 1, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analysis of convergence between organismal traits and DNA/protein sequences☆71Aug 5, 2026Updated 3 weeks ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆58Jun 17, 2026Updated 2 months ago
- Multi-genome synteny block visualization tool☆65Aug 6, 2026Updated 3 weeks ago
- Generate alternative long reads with the help of target`s assemblies, target`s PacBio HiFi reads and reference genome.☆20Mar 25, 2026Updated 5 months ago
- ☆42May 19, 2025Updated last year
- Pairwise whole genome aligner☆244Jul 29, 2026Updated last month
- ☆48Jul 23, 2025Updated last year
- Possvm: find clusters of orthologs in phylogenies using species overlap & MCL☆19Jul 19, 2024Updated 2 years ago
- TD2☆41May 17, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Infering ancestral synteny with hierarchical orthologous groups☆38Jun 26, 2026Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆207Updated this week
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 10 months ago
- ☆11Aug 18, 2026Updated last week
- Scoring GT/AG sites for improving spliced alignment☆58Nov 10, 2025Updated 9 months ago
- BUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins☆110Jun 30, 2026Updated 2 months ago
- k-mer based assembly evaluation☆354Jul 6, 2026Updated last month