DessimozLab / FastOMALinks
FastOMA is a scalable software package to infer orthology relationship.
☆83Updated this week
Alternatives and similar repositories for FastOMA
Users that are interested in FastOMA are comparing it to the libraries listed below
Sorting:
- Tiberius is a deep learning gene finder.☆78Updated this week
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- A program for detection of tRNA genes☆71Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 11 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆46Updated 3 months ago
- k-mer learning materials☆80Updated 8 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆81Updated last year
- ☆81Updated 2 weeks ago
- paml documentation and tutorials☆62Updated 5 months ago
- A Nextflow pipeline for evaluating assembly quality☆37Updated last week
- Best practices and workflow for genome annotation☆78Updated 6 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- A program for assessing the T2T genome continuity☆88Updated 2 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆113Updated 3 months ago
- ☆66Updated last month
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated this week
- Analysis of convergence between organismal traits and DNA/protein sequences☆58Updated last week
- orthology assignment using phylogenetic and network analyses☆49Updated last week
- List of genome assembly tools☆80Updated 3 weeks ago
- PacBio BAM toolkit☆46Updated 8 months ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆82Updated 2 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆45Updated last year
- Interactive quality assessment of genome assemblies☆113Updated 5 months ago
- Synteny Imager☆64Updated 3 months ago
- Phylogenetic orthology inference for comparative genomics☆64Updated this week
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆95Updated last year
- Algorithm For Gene Order Reconstruction in Ancestors☆77Updated 2 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆75Updated last month