DessimozLab / FastOMA
FastOMA is a scalable software package to infer orthology relationship.
☆35Updated this week
Related projects ⓘ
Alternatives and complementary repositories for FastOMA
- orthology assignment using phylogenetic and network analyses☆45Updated last month
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆71Updated this week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- Graph-based assembly phasing☆66Updated 3 weeks ago
- An R package designed for drawing gene arrow maps☆32Updated 2 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- deep learning gene finder☆36Updated this week
- ☆40Updated this week
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆51Updated this week
- A Nextflow pipeline for evaluating assembly quality☆26Updated 2 weeks ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 4 months ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆26Updated 6 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- Detection of incorrectly labeled sequences across kingdoms☆80Updated 2 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆37Updated this week
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆38Updated 2 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- A comparative genomics workflow using Nextflow, conda, Julia and R☆34Updated 7 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- ☆24Updated 10 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- ☆39Updated last week
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated this week
- tools for assessing the accuracy of genome assemblies☆34Updated 7 months ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- Visualize whole genome alignments as linear maps☆70Updated 2 months ago