lh3 / srfLinks
SRF: Satellite Repeat Finder
☆101Updated last year
Alternatives and similar repositories for srf
Users that are interested in srf are comparing it to the libraries listed below
Sorting:
- Simple pileup-based variant caller☆95Updated 8 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- A program for assessing the T2T genome continuity☆92Updated 3 weeks ago
- Call select base modifications in PacBio HiFi reads☆15Updated last month
- Pipeline to convert a haploid assembly into diploid☆109Updated 11 months ago
- ☆78Updated 5 years ago
- Application of pan-genome for population☆116Updated 2 months ago
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆75Updated last week
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆54Updated 5 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated last month
- PacBio BAM toolkit☆48Updated 10 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆100Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆90Updated 3 weeks ago
- ☆68Updated 2 weeks ago
- A organelle de novo genome assembly toolkit☆71Updated 10 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆118Updated last month
- Toolkit for calling structural variants using short or long reads☆115Updated 3 weeks ago
- ☆45Updated 9 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 4 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆116Updated 3 weeks ago
- A program to call variants from genome alignment☆81Updated 8 months ago
- Neural network classification of TE☆97Updated 2 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year