SRF: Satellite Repeat Finder
☆102Jan 8, 2024Updated 2 years ago
Alternatives and similar repositories for srf
Users that are interested in srf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Evaluating genome assemblies☆119Mar 3, 2026Updated last month
- Constructing a pangenome gene graph☆205Aug 11, 2025Updated 8 months ago
- Yet another k-mer analyzer☆166Dec 30, 2025Updated 3 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆163Nov 24, 2025Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆48Feb 23, 2021Updated 5 years ago
- ☆186Feb 10, 2026Updated 2 months ago
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 6 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆214Mar 20, 2026Updated 3 weeks ago
- A program for assessing the T2T genome continuity☆94Feb 28, 2026Updated last month
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- Extensive de-novo TE Annotator☆438Updated this week
- ☆29Aug 7, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Assembled Genomes Compressor☆179Mar 26, 2026Updated 2 weeks ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆22Jul 30, 2025Updated 8 months ago
- Make colorful identity heatmaps of genomic sequence☆128May 24, 2024Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆387Mar 11, 2026Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆108Jun 6, 2021Updated 4 years ago
- A genome completeness evaluation tool based on miniprot☆237Sep 18, 2025Updated 6 months ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- PECAT, a phased error correct and assembly tool☆62Dec 8, 2025Updated 4 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- Dynamic Elongation of a Genome Assembly Path☆25Feb 25, 2026Updated last month
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆107Jul 23, 2024Updated last year
- ☆102Apr 22, 2024Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- ☆42May 19, 2025Updated 10 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆248Dec 16, 2025Updated 3 months ago
- k-mer based assembly evaluation☆341Jun 28, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Sequence-to-graph mapper and graph generator☆475Aug 11, 2025Updated 8 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago