Alternatives and similar repositories for srf:

Users that are interested in srf are comparing it to the libraries listed below

• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆40Updated 2 weeks ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆40Updated 4 months ago
• daewoooo / SVbyEye
  ☆76Updated 2 weeks ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆47Updated last year
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆88Updated 2 weeks ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆69Updated last week
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆99Updated last month
• PacificBiosciences / jasmine
  Predict 5mC in PacBio HiFi reads
  ☆1Updated last month
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆52Updated 2 years ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆75Updated 9 months ago
• kjenike / panagram
  ☆61Updated this week
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆65Updated 2 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆90Updated 2 weeks ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆58Updated 5 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆33Updated 2 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆59Updated last year
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆43Updated 6 months ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆59Updated 2 months ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆32Updated last week
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆85Updated 7 months ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆58Updated last month
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆54Updated last year
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆46Updated 2 years ago
• SAMtoBAM / MUMandCo
  MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆65Updated 3 weeks ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 3 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆79Updated last month