Yet another k-mer analyzer
☆177Dec 30, 2025Updated 8 months ago
Alternatives and similar repositories for yak
Users that are interested in yak are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- k-mer based assembly evaluation☆355Jul 6, 2026Updated 2 months ago
- ☆78Jun 12, 2020Updated 6 years ago
- haplotypic duplication identification tool☆295Oct 30, 2025Updated 10 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Long read / genome alignment software☆331Dec 16, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Evaluate variant calls and its combination with k-mer multiplicity☆73Dec 2, 2022Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆119Jun 6, 2021Updated 5 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆169Sep 15, 2026Updated last week
- Evaluating genome assemblies☆127Mar 3, 2026Updated 6 months ago
- SRF: Satellite Repeat Finder☆109Jan 8, 2024Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆419Aug 25, 2026Updated 3 weeks ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆814May 31, 2026Updated 3 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆190Jul 21, 2026Updated 2 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Sequence-to-graph mapper and graph generator☆489Aug 11, 2025Updated last year
- A genome completeness evaluation tool based on miniprot☆267Aug 17, 2026Updated last month
- ☆290Dec 29, 2025Updated 8 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 5 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆145Aug 24, 2025Updated last year
- ☆124Sep 11, 2026Updated last week
- A program for assessing the T2T genome continuity and completeness☆97Sep 8, 2026Updated 2 weeks ago
- GBWT-based handle graph☆35Aug 19, 2026Updated last month
- Align proteins to genomes with splicing and frameshift☆420Jan 5, 2026Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A gap-closing software tool that uses long reads to enhance genome assembly.☆250Sep 6, 2024Updated 2 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆201May 11, 2025Updated last year
- ☆41Feb 22, 2023Updated 3 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 9 months ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated 2 years ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆177Nov 24, 2025Updated 9 months ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆224Aug 27, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Nanopore data assembler☆171Mar 27, 2022Updated 4 years ago
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆356Jul 27, 2026Updated last month
- PECAT, a phased error correct and assembly tool☆68Dec 8, 2025Updated 9 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆245Dec 29, 2023Updated 2 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- Synteny and Rearrangement Identifier☆491Jul 1, 2026Updated 2 months ago