Alternatives and similar repositories for yak

Users that are interested in yak are comparing it to the libraries listed below

• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆139Updated 4 months ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆127Updated 3 years ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆147Updated 4 months ago
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆137Updated 3 weeks ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆97Updated 4 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆128Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated last month
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆96Updated last year
• twolinin / longphase
  ☆119Updated 2 weeks ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆107Updated 9 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆149Updated last week
• EichlerLab / pav
  Phased assembly variant caller
  ☆129Updated 11 months ago
• mobinasri / flagger
  Evaluating genome assemblies
  ☆109Updated 2 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆161Updated 3 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆116Updated 5 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆190Updated 6 months ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆114Updated this week
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆106Updated 2 months ago
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆198Updated 3 months ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆81Updated last year
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆178Updated 4 years ago
• qjiangzhao / TEtrimmer
  TEtrimmer: a novel tool to automate manual curation of transposable elements
  ☆106Updated this week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆164Updated last week
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆114Updated 5 months ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆130Updated 2 months ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆118Updated 11 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆228Updated 2 months ago
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆150Updated 2 weeks ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆104Updated 4 years ago