Yet another k-mer analyzer
☆166Dec 30, 2025Updated 3 months ago
Alternatives and similar repositories for yak
Users that are interested in yak are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- k-mer based assembly evaluation☆341Jun 28, 2024Updated last year
- ☆78Jun 12, 2020Updated 5 years ago
- haplotypic duplication identification tool☆280Oct 30, 2025Updated 5 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Long read / genome alignment software☆312Dec 16, 2025Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆149Jul 7, 2025Updated 9 months ago
- Evaluating genome assemblies☆119Mar 3, 2026Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆108Jun 6, 2021Updated 4 years ago
- SRF: Satellite Repeat Finder☆102Jan 8, 2024Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆238Sep 18, 2025Updated 6 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆387Updated this week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆764Mar 18, 2025Updated last year
- Sequence-to-graph mapper and graph generator☆475Aug 11, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆165Jul 4, 2025Updated 9 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆100Apr 7, 2026Updated last week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 7 months ago
- ☆286Dec 29, 2025Updated 3 months ago
- A program for assessing the T2T genome continuity☆94Feb 28, 2026Updated last month
- GBWT-based handle graph☆32Mar 17, 2026Updated 3 weeks ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- Align proteins to genomes with splicing and frameshift☆398Jan 5, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆39Feb 22, 2023Updated 3 years ago
- ☆119Oct 10, 2025Updated 6 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆164Nov 24, 2025Updated 4 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆248Dec 16, 2025Updated 3 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆194May 11, 2025Updated 11 months ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- Jasmine: SV Merging Across Samples☆246Dec 20, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- base-accurate DNA sequence alignments using WFA and mashmap3☆214Mar 20, 2026Updated 3 weeks ago
- PECAT, a phased error correct and assembly tool☆62Dec 8, 2025Updated 4 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆344Apr 7, 2025Updated last year
- Nanopore data assembler☆166Mar 27, 2022Updated 4 years ago
- Synteny and Rearrangement Identifier☆460Mar 17, 2026Updated 3 weeks ago