lh3 / yakLinks
Yet another k-mer analyzer
☆144Updated last year
Alternatives and similar repositories for yak
Users that are interested in yak are comparing it to the libraries listed below
Sorting:
- Evaluation and polishing workflows for T2T genome assemblies☆137Updated last month
- Structural Variant Identification Method using Genome Assemblies☆122Updated 2 years ago
- Pangenome-based genome inference☆139Updated last month
- ☆116Updated this week
- Collection of tools for the analysis of CpG data☆91Updated last month
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆112Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 4 months ago
- Phased assembly variant caller☆125Updated 8 months ago
- High-precision TE Annotator☆124Updated 2 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆143Updated last month
- Constructing a pangenome gene graph☆195Updated 2 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated 2 weeks ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆90Updated last year
- A tool for somatic structural variant calling using long reads☆144Updated 3 weeks ago
- Evaluating genome assemblies☆105Updated last month
- Nanopore data assembler☆160Updated 3 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆121Updated 3 weeks ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆123Updated last month
- accurate LiftOver tool for new genome assemblies☆134Updated last year
- source code for EVM☆116Updated 9 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆80Updated 4 months ago
- Pipeline to convert a haploid assembly into diploid☆102Updated 7 months ago
- ☆155Updated last week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆157Updated 2 months ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Research release basecalling models and configurations☆115Updated 3 months ago
- Dfam Transposable Element Tools Docker container.☆100Updated last week
- Identify and find telomeres, or telomeric repeats in a genome.☆135Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆186Updated 3 months ago