lh3 / yak
Yet another k-mer analyzer
☆133Updated last year
Alternatives and similar repositories for yak:
Users that are interested in yak are comparing it to the libraries listed below
- Structural Variant Identification Method using Genome Assemblies☆111Updated 2 years ago
- Constructing a pangenome gene graph☆186Updated 3 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 7 months ago
- High-precision TE Annotator☆114Updated last week
- ☆110Updated last month
- Phased assembly variant caller☆112Updated 4 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆128Updated 6 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆135Updated 2 months ago
- Evaluating genome assemblies☆88Updated last month
- Pangenome-based genome inference☆128Updated last week
- Comparison of multiple long read datasets☆127Updated 3 weeks ago
- Nanopore data assembler☆150Updated 3 years ago
- Application of pan-genome for population☆104Updated 6 months ago
- Long read aligner☆115Updated last year
- A tool for somatic structural variant calling using long reads☆128Updated 2 weeks ago
- ☆143Updated last week
- Mapping pipeline for data generated using Arima-HiC☆76Updated 11 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆95Updated 2 months ago
- Research release basecalling models and configurations☆110Updated 10 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆130Updated last month
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆100Updated last month
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆86Updated 9 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆180Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆146Updated 3 weeks ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆168Updated 6 months ago
- A genome completeness evaluation tool based on miniprot☆207Updated this week
- Toolkit for calling structural variants using short or long reads☆102Updated this week
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆84Updated 5 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆102Updated last year