syncmer graphs, and perhaps other sorts of sequence graphs
☆48Aug 28, 2026Updated last month
Alternatives and similar repositories for syng
Users that are interested in syng are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- ☆27Jun 16, 2026Updated 3 months ago
- Pairwise whole genome aligner☆244Sep 4, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Minipoa: A minimizer-based method for fast and memory-efficient partial order alignment☆22Oct 1, 2026Updated last week
- 1-code framework: docs, C-library, and tools☆28Aug 14, 2026Updated last month
- Minimum plain text representation of kmer sets☆20Jan 30, 2025Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Jun 17, 2024Updated 2 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated 3 weeks ago
- Multiple sequence alignment of long tandem repeats☆34Updated this week
- ONEcode package to replace SAM/BAM, especially for eDNA mapping to everything☆20Aug 17, 2026Updated last month
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- An extensible and performant aligner and read mapper☆107Sep 15, 2026Updated 3 weeks ago
- A SIMD-accelerated library to compute random minimizers☆48Oct 2, 2026Updated last week
- implicit pangenome graph☆114Updated this week
- Wavefront alignment algorithm (WFA) in Golang☆33Aug 21, 2026Updated last month
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆116Jul 11, 2026Updated 2 months ago
- Efficient construction of the BWT using string compression☆24May 26, 2026Updated 4 months ago
- alignment to variation graph inducer☆165Jul 29, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mumemto: multi-MUM and MEM finding across pangenomes☆138Sep 21, 2026Updated 2 weeks ago
- An efficient CLI to extract sequences from the SRA☆132Jun 12, 2026Updated 3 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆17Sep 24, 2026Updated 2 weeks ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- Compacted and colored de Bruijn graph construction and querying☆100Oct 1, 2026Updated last week
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 5 months ago
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆24Sep 9, 2026Updated last month
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Updated this week
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆46Mar 9, 2026Updated 7 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated 7 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆39Nov 19, 2024Updated last year
- A fast K-mer counter for high-fidelity shotgun datasets☆149Jan 19, 2026Updated 8 months ago
- GBZ file format for pangenome graphs☆46Sep 14, 2026Updated 3 weeks ago