richarddurbin / syngView external linksLinks
syncmer graphs, and perhaps other sorts of sequence graphs
☆24Jan 6, 2026Updated last month
Alternatives and similar repositories for syng
Users that are interested in syng are comparing it to the libraries listed below
Sorting:
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated last year
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last week
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 6 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- ☆14Oct 14, 2020Updated 5 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆19Jan 22, 2026Updated 3 weeks ago
- Multiple sequence alignment of long tandem repeats☆25Jan 9, 2026Updated last month
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- Everything but the kitchen sink☆12Feb 6, 2025Updated last year
- GBWT-based handle graph☆31Updated this week
- Mumemto: multi-MUM and MEM finding across pangenomes☆128Dec 8, 2025Updated 2 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 2, 2026Updated 2 weeks ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- Efficient, parallel compression for terabyte-scale data☆60Sep 27, 2025Updated 4 months ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆70Jun 17, 2024Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated this week
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆110Jan 26, 2026Updated 3 weeks ago
- Assembled Genomes Compressor☆178Nov 25, 2024Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 2 years ago
- ☆16Aug 8, 2025Updated 6 months ago
- alignment to variation graph inducer☆157Jan 20, 2026Updated 3 weeks ago
- Pairwise whole genome aligner☆227Jan 21, 2026Updated 3 weeks ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆56Jul 6, 2025Updated 7 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Aug 26, 2025Updated 5 months ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- ☆38Oct 6, 2025Updated 4 months ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 2 years ago
- ☆24Aug 25, 2025Updated 5 months ago
- An efficient CLI to extract sequences from the SRA☆120Jan 30, 2026Updated 2 weeks ago
- ☆18May 10, 2023Updated 2 years ago
- ☆13Jan 20, 2016Updated 10 years ago