richarddurbin / syngLinks
syncmer graphs, and perhaps other sorts of sequence graphs
☆21Updated 4 months ago
Alternatives and similar repositories for syng
Users that are interested in syng are comparing it to the libraries listed below
Sorting:
- Long-read aligner to pangenome graphs☆26Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Extracts subgraphs or components from a graph in GFA format☆23Updated 8 months ago
- General purpose utility related to GAF files☆29Updated this week
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated last month
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- ☆32Updated 2 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 3 weeks ago
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆21Updated last month
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated 2 months ago
- Differential k-mer analysis☆36Updated last year
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- ☆28Updated 4 months ago
- Convert HAL to VG☆22Updated 11 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- ☆14Updated last year
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Updated 4 months ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Updated 4 months ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago