richarddurbin / syngLinks
syncmer graphs, and perhaps other sorts of sequence graphs
☆20Updated 2 months ago
Alternatives and similar repositories for syng
Users that are interested in syng are comparing it to the libraries listed below
Sorting:
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 9 months ago
- ☆15Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated this week
- Extracts subgraphs or components from a graph in GFA format☆23Updated 7 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆37Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last month
- ☆14Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 7 months ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- ☆16Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Genome Assembly 102☆14Updated 2 months ago
- General purpose utility related to GAF files☆28Updated 3 weeks ago
- Convert HAL to VG☆22Updated 10 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 7 months ago
- ☆21Updated last week
- ☆32Updated 2 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 2 months ago
- A long read simulator based on badread idea☆22Updated 2 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 7 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆17Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago