tolkit / gfatkLinks
A plant organellar Graphical Fragment Assembly toolkit
☆16Updated 7 months ago
Alternatives and similar repositories for gfatk
Users that are interested in gfatk are comparing it to the libraries listed below
Sorting:
- ☆17Updated 4 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 7 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 8 months ago
- your friendly pangenome graph genotyper☆10Updated 2 years ago
- Genome Assembly 102☆14Updated last month
- Genotyping of copy number sensitive allele-specific haplotypes☆15Updated 2 weeks ago
- ☆16Updated 2 years ago
- ☆24Updated 6 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 11 months ago
- Everything but the kitchen sink☆11Updated 4 months ago
- Shared k-mer content between two genomes☆17Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- ☆18Updated 3 months ago
- Prefix-renaming FASTA records really fast.☆17Updated 11 months ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated last month
- Extracts subgraphs or components from a graph in GFA format☆23Updated 6 months ago
- Pangenome Graph Variation Format (PGVF)☆19Updated 4 years ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 7 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆9Updated 7 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆12Updated 2 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- Extracting paths from assembly graphs☆23Updated last year
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 4 months ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Updated 2 months ago
- ☆21Updated 2 weeks ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 10 months ago
- Utilities to detect and profile `het-kmers`☆11Updated 10 months ago
- recompute GFA link overlaps☆25Updated 2 years ago