Alternatives and similar repositories for gfatk:

Users that are interested in gfatk are comparing it to the libraries listed below

• MoinSebi / gfa2bin
  ☆19Updated 4 months ago
• lrobidou / KFC
  ☆16Updated 2 months ago
• chfi / pafview
  ☆17Updated 2 months ago
• pangenome / gfagino
  your friendly pangenome graph genotyper
  ☆10Updated 2 years ago
• chfi / gfainject
  ☆15Updated last year
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆16Updated 2 months ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 7 months ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 6 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 5 months ago
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆17Updated last year
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 10 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆23Updated 2 months ago
• Adamtaranto / TIRmite
  Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
  ☆10Updated 2 weeks ago
• ASLeonard / pandrawer
  Everything but the kitchen sink
  ☆11Updated 2 months ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆12Updated 6 years ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 9 months ago
• lijuzeng / dna2bit
  ☆12Updated 4 months ago
• ldenti / palss
  ☆21Updated last week
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated 10 months ago
• marbl / training
  Genome Assembly 102
  ☆14Updated this week
• jmonlong / pangenome-evaluation
  Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map
  ☆10Updated 3 years ago
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆15Updated last year
• davidebolo1993 / cosigt
  ☆17Updated 2 weeks ago
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆9Updated 6 months ago
• algbio / matchtigs
  Minimum plain text representation of kmer sets
  ☆17Updated 2 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆29Updated 5 months ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆23Updated last year
• thegenemyers / PHASE-MERS
  Utilities to detect and profile `het-kmers`
  ☆11Updated 8 months ago
• MoinSebi / gSV
  ☆11Updated 2 years ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆23Updated 2 years ago