Alternatives and similar repositories for gfatk

Users that are interested in gfatk are comparing it to the libraries listed below

• pangenome / gfagino
  your friendly pangenome graph genotyper
  ☆10Updated 2 years ago
• chfi / gfainject
  ☆16Updated 2 years ago
• ldenti / palss
  ☆21Updated 3 weeks ago
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆18Updated 2 years ago
• MoinSebi / gfa2bin
  ☆24Updated 7 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 8 months ago
• lrobidou / KFC
  ☆18Updated 5 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 3 weeks ago
• chfi / pafview
  ☆17Updated 5 months ago
• unipept / umgap
  A taxonomic classifier for shotgun metagenomics reads
  ☆12Updated 3 months ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated last month
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• Adamtaranto / TIRmite
  Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
  ☆10Updated 3 months ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 10 months ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 9 months ago
• ASLeonard / pandrawer
  Everything but the kitchen sink
  ☆11Updated 5 months ago
• algbio / matchtigs
  Minimum plain text representation of kmer sets
  ☆17Updated 5 months ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆24Updated 2 years ago
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆10Updated last month
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆16Updated 8 months ago
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆15Updated last week
• 6br / hgb
  A read alignment visualization library for long reads
  ☆11Updated 2 years ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆12Updated 6 years ago
• oxli-bio / oxli
  k-mers and the like
  ☆22Updated 2 weeks ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆29Updated 8 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• mbhall88 / psdm
  Compute a pairwise SNP distance matrix from one or two alignment(s)
  ☆25Updated 10 months ago
• aljpetri / isONclust3
  De novo clustering of long transcript reads into genes
  ☆15Updated 2 months ago
• MoinSebi / gSV
  ☆11Updated 2 years ago
• Kuanhao-Chao / Wheeler_Graph_Toolkit
  🔎 wheeler graph recognition algorithm, visualization and generation
  ☆19Updated 2 years ago