tolkit / gfatkLinks
A plant organellar Graphical Fragment Assembly toolkit
☆16Updated 2 months ago
Alternatives and similar repositories for gfatk
Users that are interested in gfatk are comparing it to the libraries listed below
Sorting:
- ☆17Updated 9 months ago
- base-level dotplots from PAF alignments☆27Updated 2 months ago
- your friendly pangenome graph genotyper☆10Updated 2 years ago
- ☆26Updated 3 months ago
- convert variation graph alignments to coverage maps over nodes☆26Updated 2 weeks ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆12Updated last month
- ☆17Updated 2 years ago
- ☆15Updated 4 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated 2 years ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- ☆22Updated 2 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- ☆19Updated 9 months ago
- Minimum plain text representation of kmer sets☆16Updated 9 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 5 months ago
- AlfaPang builds pangenome graphs without alignments or references.☆13Updated 2 weeks ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 3 weeks ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 3 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- Prefix-renaming FASTA records really fast.☆16Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated last month
- Genome Assembly 102☆14Updated 7 months ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated 3 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Long-read aligner to pangenome graphs☆28Updated last year
- Everything but the kitchen sink☆11Updated 9 months ago
- A read alignment visualization library for long reads☆10Updated 3 years ago
- De novo clustering of long transcript reads into genes☆17Updated 6 months ago