alignment to variation graph inducer
☆163Jul 22, 2026Updated this week
Alternatives and similar repositories for seqwish
Users that are interested in seqwish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- linearize and simplify variation graphs using blocked partial order alignment☆63Mar 31, 2026Updated 3 months ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆246Updated this week
- ☆289Dec 29, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 4 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆220Jun 21, 2026Updated last month
- Sequence-to-graph mapper and graph generator☆483Aug 11, 2025Updated 11 months ago
- ☆102Apr 22, 2024Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 4 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆73Apr 15, 2020Updated 6 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆252Dec 16, 2025Updated 7 months ago
- the pangenome graph builder☆507Updated this week
- Optimized sequence graph implementations for graph genomics☆37Jun 30, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Assembled Genomes Compressor☆186Updated this week
- Graphical Fragment Assembly (GFA) Format Specification☆221Aug 21, 2024Updated last year
- Substring index for paths in a graph☆61Jul 7, 2026Updated 2 weeks ago
- ☆15Jun 29, 2021Updated 5 years ago
- Library for the Handle Graph abstraction☆25Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆404Apr 22, 2026Updated 3 months ago
- Parallel Sequence to Graph Alignment☆35Nov 26, 2022Updated 3 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆78Aug 2, 2022Updated 3 years ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆223Jul 15, 2026Updated last week
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Nov 13, 2025Updated 8 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆183Sep 19, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆142Jun 26, 2026Updated 3 weeks ago
- A fast approximate aligner for long DNA sequences☆288Oct 11, 2024Updated last year
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated last month
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 2 months ago
- A fast whole-genome aligner based on de Bruijn graphs