alignment to variation graph inducer
☆163Jul 29, 2026Updated 2 weeks ago
Alternatives and similar repositories for seqwish
Users that are interested in seqwish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- linearize and simplify variation graphs using blocked partial order alignment☆64Jul 27, 2026Updated 2 weeks ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆248Jul 23, 2026Updated 3 weeks ago
- ☆290Dec 29, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 4 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- Sequence-to-graph mapper and graph generator☆484Aug 11, 2025Updated last year
- ☆102Apr 22, 2024Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆73Apr 15, 2020Updated 6 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 7 months ago
- the pangenome graph builder☆510Jul 24, 2026Updated 2 weeks ago
- Optimized sequence graph implementations for graph genomics☆37Jun 30, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 9 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- Graph realignment tools for structural variants☆170Dec 8, 2022Updated 3 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Assembled Genomes Compressor☆186Jul 22, 2026Updated 3 weeks ago
- Graphical Fragment Assembly (GFA) Format Specification☆221Aug 21, 2024Updated last year
- Substring index for paths in a graph☆62Jul 7, 2026Updated last month
- ☆15Jun 29, 2021Updated 5 years ago
- Library for the Handle Graph abstraction☆25Jul 23, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆408Aug 4, 2026Updated last week
- Parallel Sequence to Graph Alignment☆35Nov 26, 2022Updated 3 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆79Aug 2, 2022Updated 4 years ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆224Updated this week
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Nov 13, 2025Updated 9 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆184Sep 19, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆142Jun 26, 2026Updated last month
- A fast approximate aligner for long DNA sequences☆289Oct 11, 2024Updated last year
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 2 months ago
- Fast and exact gap-affine partial order alignment☆70Apr 25, 2026Updated 3 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆160Jul 6, 2025Updated last year
- ☆63Sep 15, 2025Updated 10 months ago
- Pangenome-based genome inference☆177Aug 6, 2026Updated last week