Alternatives and similar repositories for gfa2bin

Users that are interested in gfa2bin are comparing it to the libraries listed below

• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• marbl / anianns
  ANI based satellite annotation
  ☆22Updated 3 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated 2 years ago
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆25Updated 2 weeks ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆27Updated 2 weeks ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆30Updated 4 months ago
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated 2 years ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆30Updated 2 weeks ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆37Updated 8 months ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆23Updated last week
• at-cg / RAFT
  Improved long-read assembly by preserving contained reads
  ☆30Updated last year
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated last year
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated 2 years ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆29Updated 4 years ago
• nadegeguiglielmoni / GraphUnzip
  Unzip assembly graphs with Hi-C data and/or long reads.
  ☆27Updated last year
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 7 months ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated last year
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last week
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 4 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆39Updated 2 years ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated last year
• chfi / pafview
  ☆18Updated last year
• alshai / vcf2msa
  convert a multi-sample VCF file to a multiple sequence alignment (C)
  ☆15Updated 6 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆29Updated last year
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆48Updated last year
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆14Updated 2 years ago
• marbl / training
  Genome Assembly 102
  ☆17Updated 9 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 9 months ago