☆29Aug 7, 2025Updated 8 months ago
Alternatives and similar repositories for gfa2bin
Users that are interested in gfa2bin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 2 months ago
- ☆19May 10, 2023Updated 2 years ago
- implicit pangenome graph☆98Updated this week
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆37Oct 29, 2025Updated 5 months ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated last month
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 9 months ago
- ☆21Dec 13, 2024Updated last year
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated 10 months ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- ☆28Sep 28, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- k-mers and the like☆22Updated this week
- SRF: Satellite Repeat Finder☆102Jan 8, 2024Updated 2 years ago
- Differential k-mer analysis☆40Jan 29, 2024Updated 2 years ago
- General purpose utility related to GAF files☆29Apr 2, 2026Updated last week
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 5 months ago
- ☆17Mar 17, 2023Updated 3 years ago
- Kmer Analysis of Pileups for Genotyping☆38Mar 6, 2026Updated last month
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 8 months ago
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Mar 16, 2026Updated 3 weeks ago
- ☆23Sep 9, 2025Updated 7 months ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- Optimal sequence-to-graph alignment with recombinations☆40Jul 25, 2025Updated 8 months ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 3 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- convert PAF format to CHAIN format☆34May 14, 2025Updated 10 months ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Genealogical Estimation of Variant Age (GEVA)☆32Sep 30, 2021Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 10 months ago
- ☆15Jun 29, 2021Updated 4 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year