Alternatives and similar repositories for gfa2bin

Users that are interested in gfa2bin are comparing it to the libraries listed below

• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 3 weeks ago
• davidebolo1993 / cosigt
  ☆20Updated this week
• nadegeguiglielmoni / GraphUnzip
  Unzip assembly graphs with Hi-C data and/or long reads.
  ☆28Updated 9 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆37Updated last year
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated last month
• marbl / rukki
  Extracting paths from assembly graphs
  ☆23Updated last year
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆13Updated 2 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 9 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆36Updated last year
• marbl / training
  Genome Assembly 102
  ☆14Updated 2 months ago
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆36Updated 2 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated 2 years ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆38Updated 9 months ago
• at-cg / RAFT
  ☆25Updated 10 months ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated last year
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 4 years ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆41Updated 7 months ago
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 7 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆19Updated 7 months ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆18Updated last month
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆26Updated last month
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last month
• pangenome / pgge
  the pangenome graph evaluator
  ☆27Updated 4 years ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆28Updated last year
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆34Updated last year
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆31Updated 2 weeks ago