MoinSebi / gfa2binLinks
☆28Updated 4 months ago
Alternatives and similar repositories for gfa2bin
Users that are interested in gfa2bin are comparing it to the libraries listed below
Sorting:
- convert variation graph alignments to coverage maps over nodes☆26Updated 3 weeks ago
- Extracting paths from assembly graphs☆24Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆24Updated this week
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Prefix-renaming FASTA records really fast.☆16Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 6 months ago
- ☆30Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 6 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- Convert HAL to VG☆23Updated last year
- A Hi-C scaffolding method☆22Updated 4 years ago
- FastK based version of Merqury☆29Updated 3 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆21Updated last month
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- convert PAF format to CHAIN format☆34Updated 7 months ago
- Genome Assembly 102☆17Updated 8 months ago
- Phasing reads with secondary alignments☆21Updated last year
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Updated 6 years ago
- ☆28Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆39Updated 2 months ago
- base-level dotplots from PAF alignments☆28Updated 3 months ago
- the pangenome graph evaluator☆29Updated 4 years ago