thegenemyers / FASTK
A fast K-mer counter for high-fidelity shotgun datasets
☆124Updated last month
Alternatives and similar repositories for FASTK:
Users that are interested in FASTK are comparing it to the libraries listed below
- Nanopore data assembler☆147Updated 3 years ago
- A tool for Racon polishing of miniasm assemblies☆74Updated 4 years ago
- ☆140Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆122Updated last month
- A fast whole-genome aligner based on de Bruijn graphs☆144Updated last month
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆119Updated last week
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- Yet another k-mer analyzer☆133Updated 11 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆142Updated this week
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆99Updated 3 weeks ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆223Updated 7 months ago
- Pangenome-based genome inference☆127Updated 2 weeks ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆186Updated this week
- Aligns short reads using dynamic seed size with strobemers☆165Updated this week
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- ☆109Updated 3 weeks ago
- Research release basecalling models and configurations☆107Updated 9 months ago
- Long read aligner☆115Updated last year
- Ultra-fast de novo assembler using long noisy reads☆134Updated 4 years ago
- A genome completeness evaluation tool based on miniprot☆200Updated 2 weeks ago
- ☆181Updated this week
- haplotypic duplication identification tool☆228Updated last year
- Structural Variant Identification Method using Long Reads☆168Updated 3 years ago
- Constructing a pangenome gene graph☆184Updated 8 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆177Updated 3 weeks ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆141Updated last month
- Yet another Hi-C scaffolding tool☆143Updated 4 months ago
- Dfam Transposable Element Tools Docker container.☆89Updated 2 weeks ago