thegenemyers / FASTKLinks
A fast K-mer counter for high-fidelity shotgun datasets
☆131Updated 2 months ago
Alternatives and similar repositories for FASTK
Users that are interested in FASTK are comparing it to the libraries listed below
Sorting:
- Aligns short reads using dynamic seed size with strobemers☆175Updated this week
- alignment to variation graph inducer☆150Updated last month
- A tool for Racon polishing of miniasm assemblies☆77Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 4 months ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆126Updated last month
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated last month
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆143Updated 3 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆103Updated 11 months ago
- Long read aligner☆115Updated 2 years ago
- Nanopore data assembler☆160Updated 3 years ago
- Yet another k-mer analyzer☆144Updated last year
- ☆116Updated this week
- Analysis components from Oxford Nanopore Research☆95Updated 11 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆198Updated this week
- Pairwise whole genome aligner☆184Updated 3 weeks ago
- Pangenome-based genome inference☆139Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆157Updated 2 months ago
- Read Until client library for Nanopore Sequencing☆104Updated 11 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆112Updated 2 months ago
- Structural Variant Identification Method using Long Reads☆173Updated 4 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- Research release basecalling models and configurations☆115Updated 3 months ago
- ☆155Updated last week
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆96Updated 9 months ago
- Structural Variant Identification Method using Genome Assemblies☆122Updated 2 years ago
- accurate LiftOver tool for new genome assemblies☆134Updated last year
- Constructing a pangenome gene graph☆195Updated 2 weeks ago
- Long-read mock community experiments☆106Updated 3 years ago
- Assembled Genomes Compressor☆168Updated 9 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated 2 weeks ago