thegenemyers / FASTKLinks
A fast K-mer counter for high-fidelity shotgun datasets
☆140Updated 3 weeks ago
Alternatives and similar repositories for FASTK
Users that are interested in FASTK are comparing it to the libraries listed below
Sorting:
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆168Updated last week
- A tool for Racon polishing of miniasm assemblies☆78Updated 5 months ago
- Yet another k-mer analyzer☆158Updated last month
- Long read aligner☆114Updated 2 years ago
- alignment to variation graph inducer☆157Updated 3 weeks ago
- ☆180Updated this week
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Updated 3 weeks ago
- Structural Variant Identification Method using Long Reads☆181Updated 4 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆122Updated 8 months ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆135Updated 3 months ago
- Structural Variant Identification Method using Genome Assemblies☆134Updated 3 years ago
- Nanopore data assembler☆165Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆122Updated 4 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Updated last week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆157Updated last week
- Pairwise whole genome aligner☆227Updated 3 weeks ago
- Read Until client library for Nanopore Sequencing☆109Updated last year
- Analysis components from Oxford Nanopore Research☆96Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆191Updated 9 months ago
- Pangenome-based genome inference☆155Updated 2 months ago
- ☆123Updated 3 weeks ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆248Updated last month
- Aligns short reads using dynamic seed size with strobemers☆192Updated this week
- Identify and find telomeres, or telomeric repeats in a genome.☆158Updated 2 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆158Updated 7 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆132Updated 2 months ago
- Research release basecalling models and configurations☆117Updated 8 months ago
- ☆145Updated 3 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Updated 3 years ago