Alternatives and similar repositories for FASTK:

Users that are interested in FASTK are comparing it to the libraries listed below

• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆112Updated 2 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆107Updated 8 months ago
• twolinin / longphase
  ☆109Updated last week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆138Updated last month
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆73Updated 3 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆121Updated 2 weeks ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆93Updated 6 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆122Updated 7 months ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 3 years ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆142Updated last month
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆132Updated 4 years ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆143Updated 2 years ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆123Updated this week
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆137Updated 2 weeks ago
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆124Updated 3 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆114Updated last month
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆192Updated this week
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated last year
• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆119Updated this week
• lh3 / yak
  Yet another k-mer analyzer
  ☆131Updated 11 months ago
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆185Updated this week
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆97Updated 2 weeks ago
• marbl / ModDotPlot
  ☆134Updated last week
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆183Updated 7 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆176Updated last week
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆222Updated 6 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆207Updated 2 months ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆104Updated 8 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆99Updated last month