phasegenomics / matlock
Simple tools for working with Hi-C data
☆17Updated 6 years ago
Alternatives and similar repositories for matlock:
Users that are interested in matlock are comparing it to the libraries listed below
- SINE annotation tool for plant genomes☆17Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆13Updated last week
- Genome alignment and synteny plots☆29Updated last year
- ☆16Updated 3 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Construct and Analyze the North American Vitis pangenome☆22Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Identification of conserved non-coding sequences in plants☆16Updated 3 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated 11 months ago
- Tools for working with agp files☆13Updated last week
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆18Updated last week
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- Study of TE evolution in a population of genomes☆9Updated last year
- T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.☆11Updated 6 months ago
- parallelLastz: Running Lastz in parallel☆15Updated 6 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- plot genome alignment synteny☆21Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated last month
- ☆15Updated 2 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 5 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆13Updated 5 months ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Consensus genome annotation using OMA☆22Updated 3 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated 10 months ago
- ☆16Updated 3 months ago