tlemane / kmdiffLinks
Differential k-mer analysis
☆37Updated last year
Alternatives and similar repositories for kmdiff
Users that are interested in kmdiff are comparing it to the libraries listed below
Sorting:
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- ☆28Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated 11 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- Statistics and analysis for variation graphs☆45Updated 9 months ago
- ☆28Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Updated 10 months ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated last week
- FastK based version of Merqury☆28Updated 2 weeks ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Extracting paths from assembly graphs☆24Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 3 weeks ago
- ☆25Updated 2 months ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated last month
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 3 months ago
- the pangenome graph evaluator☆28Updated 4 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- ☆32Updated 2 years ago
- Linear-time de novo Long Read Assembler☆41Updated 8 months ago