Alternatives and similar repositories for kmdiff:

Users that are interested in kmdiff are comparing it to the libraries listed below

• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆36Updated 3 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated last month
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆47Updated last month
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆35Updated last week
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆27Updated 2 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆22Updated last month
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆59Updated this week
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆22Updated 9 months ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆48Updated 6 months ago
• EvolBioInf / phylonium
  ♥ Fast and Accurate Estimation of Evolutionary Distances
  ☆27Updated 8 months ago
• at-cg / RAFT
  ☆21Updated 4 months ago
• pierrepeterlongo / back_to_sequences
  ☆41Updated last month
• rchikhi / 2022-pangenome-graphs-intro
  ☆21Updated 3 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 3 years ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆30Updated last month
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated last year
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated 3 weeks ago
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆51Updated 3 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆35Updated 3 months ago
• mjsull / chromatiblock
  Colinear block visualisation tool
  ☆30Updated last year
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• mrvollger / NucFreq
  ☆35Updated 10 months ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆24Updated 3 years ago
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆44Updated last year
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆33Updated last month
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆22Updated last month
• pangenome / impg
  implicit pangenome graph
  ☆51Updated this week