Alternatives and similar repositories for kmdiff

Users that are interested in kmdiff are comparing it to the libraries listed below

• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 9 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆44Updated last year
• at-cg / RAFT
  ☆30Updated last year
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆37Updated 7 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆26Updated this week
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆23Updated 2 months ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆47Updated last year
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 7 months ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆36Updated 2 weeks ago
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆41Updated 3 months ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated 4 months ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated last year
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆24Updated last month
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• nextgenusfs / redmask
  Genome assembly soft-masking using Red (REpeat Detector)
  ☆18Updated 7 years ago
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆15Updated 5 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated 2 years ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆29Updated 4 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆29Updated last year
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last month
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 3 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆39Updated 3 months ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆32Updated 4 years ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆30Updated 4 months ago