ShunOuchi / GreenHillLinks
De novo chromosome-level scaffolding and phasing tool using Hi-C
☆29Updated 3 weeks ago
Alternatives and similar repositories for GreenHill
Users that are interested in GreenHill are comparing it to the libraries listed below
Sorting:
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated 2 months ago
- ☆38Updated 2 months ago
- COsine SImilarity-based Genotyper using pangenomes☆24Updated this week
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆26Updated 8 months ago
- SV calling for diploid assemblies☆30Updated last year
- Consensus genome annotation using OMA☆29Updated 5 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆29Updated last month
- ☆29Updated last year
- ☆28Updated 4 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- ☆29Updated 2 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆36Updated 2 months ago
- SV genotyper for long reads with a variation graph☆15Updated 4 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 7 months ago
- Generating UTRs from SHort Reads☆12Updated 5 years ago