ShunOuchi / GreenHill

Related projects ⓘ

Alternatives and complementary repositories for GreenHill

• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆39Updated last week
• ERGA-consortium / pipelines
  ☆14Updated 2 weeks ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆31Updated last month
• Nextomics / NextPolish2
  Repeat-aware polishing genomes assembled using HiFi long reads
  ☆70Updated this week
• kensung-lab / hypo-assembler
  ☆37Updated 2 weeks ago
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆27Updated 4 months ago
• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆26Updated 6 months ago
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆28Updated 2 months ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆38Updated 3 weeks ago
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆21Updated 3 weeks ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆36Updated last year
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆39Updated 3 weeks ago
• mobinasri / flagger
  Evaluating genome assemblies
  ☆59Updated last week
• bcgsc / LongStitch
  Correct and scaffold assemblies using long reads
  ☆47Updated last year
• shelkmike / Mabs
  Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye
  ☆26Updated 6 months ago
• a-ludi / dentist
  Close assembly gaps using long-reads at high accuracy.
  ☆47Updated 9 months ago
• rhysf / Diamond2GO
  ☆19Updated 3 months ago
• sanger-tol / PretextMap
  Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.
  ☆20Updated 2 years ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆71Updated 3 weeks ago
• wdecoster / phasius
  ☆13Updated 2 months ago
• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆31Updated last month
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last week
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆44Updated 3 weeks ago
• mcfrith / last-genome-alignments
  ☆50Updated last year
• mrvollger / NucFreq
  ☆32Updated 8 months ago
• fawaz-dabbaghieh / bubble_gun
  ☆39Updated this week
• starskyzheng / panpop
  Application of pan-genome for population
  ☆96Updated last month
• delehef / asgart
  A genome-scale, fast, and precise segmental duplications mapping tool
  ☆31Updated 2 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆53Updated last month
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆32Updated 2 years ago