ShunOuchi / GreenHillLinks
De novo chromosome-level scaffolding and phasing tool using Hi-C
☆28Updated 7 months ago
Alternatives and similar repositories for GreenHill
Users that are interested in GreenHill are comparing it to the libraries listed below
Sorting:
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated 2 years ago
- ☆38Updated last week
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 9 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 5 months ago
- ☆28Updated last year
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- SV genotyper for long reads with a variation graph☆12Updated 2 months ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated last week
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated 2 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 10 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆25Updated 2 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Updated 4 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆44Updated this week
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- ☆31Updated 9 months ago
- Consensus genome annotation using OMA☆26Updated 3 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆31Updated 2 weeks ago
- Genome alignment and synteny plots☆32Updated 2 years ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Domain based annotation of transposable elements☆20Updated this week
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 4 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 months ago
- ☆29Updated last year