De novo chromosome-level scaffolding and phasing tool using Hi-C
☆30Nov 23, 2025Updated 8 months ago
Alternatives and similar repositories for GreenHill
Users that are interested in GreenHill are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆34Jul 13, 2026Updated last month
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated last year
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 3 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Aug 4, 2026Updated 2 weeks ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆15Nov 20, 2023Updated 2 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- ☆16Apr 3, 2023Updated 3 years ago
- A comprehensive telomere annotation tool for genome assemblies and graphs.☆18Aug 5, 2026Updated last week
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Jul 1, 2026Updated last month
- High throughput python tool for mining and analysis of gene duplications.☆16Jul 30, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆45Dec 29, 2025Updated 7 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 11 months ago
- Telomere compliment tools☆26Nov 17, 2025Updated 9 months ago
- blastn2dotplots: multiple dot-plot visualizer☆29Sep 15, 2025Updated 11 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 6 months ago
- ☆18Jan 29, 2025Updated last year
- ☆23Jan 13, 2026Updated 7 months ago
- Dynamic Elongation of a Genome Assembly Path☆28Jul 27, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 6 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆53Aug 5, 2026Updated last week
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆18Nov 29, 2024Updated last year
- An ultra-fast gzip file tools☆28Jun 23, 2026Updated last month
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- A chromosome-level polyploid phasing scaffolding tool☆18Aug 6, 2026Updated last week
- ☆28May 12, 2026Updated 3 months ago
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated 2 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆278Aug 10, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆46Aug 5, 2026Updated last week
- ☆198Feb 10, 2026Updated 6 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- convert PAF format to CHAIN format☆36May 14, 2025Updated last year
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆115Jun 12, 2026Updated 2 months ago