milkschen / leviosam2Links
Fast and accurate coordinate conversion between assemblies
☆117Updated 2 months ago
Alternatives and similar repositories for leviosam2
Users that are interested in leviosam2 are comparing it to the libraries listed below
Sorting:
- Toolkit for calling structural variants using short or long reads☆115Updated 3 weeks ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆129Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- Copy number caller for long read data including SNV utilization☆68Updated 9 months ago
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- Simple pileup-based variant caller☆95Updated 8 months ago
- Phased assembly variant caller☆130Updated last year
- ☆121Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- ☆52Updated 3 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆85Updated 3 months ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- A local-haplotagging-based small and structural variant caller☆90Updated 2 weeks ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆83Updated 3 years ago
- SV caller for nanopore data☆92Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last month
- Research release basecalling models and configurations☆117Updated 7 months ago
- Pangenome-based genome inference☆152Updated last month
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- ☆80Updated 11 months ago
- Collection of tools for the analysis of CpG data☆102Updated 5 months ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- Pipeline to convert a haploid assembly into diploid☆109Updated 11 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Updated 3 years ago
- accurate LiftOver tool for new genome assemblies☆146Updated last year