Fast and accurate coordinate conversion between assemblies
☆118Oct 9, 2025Updated 4 months ago
Alternatives and similar repositories for leviosam2
Users that are interested in leviosam2 are comparing it to the libraries listed below
Sorting:
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated last month
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Mar 7, 2025Updated 11 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Nov 19, 2025Updated 3 months ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 2 years ago
- Jasmine: SV Merging Across Samples☆241Dec 20, 2024Updated last year
- A genome completeness evaluation tool based on miniprot☆235Sep 18, 2025Updated 5 months ago
- Deep learning framework for SV calling and genotyping☆113Nov 8, 2023Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆115Feb 11, 2026Updated 2 weeks ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- ☆101Apr 22, 2024Updated last year
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆110Jan 26, 2026Updated last month
- Improved Phased Assembler☆28Mar 11, 2022Updated 3 years ago
- Structural Variant Identification Method using Genome Assemblies☆136Sep 16, 2022Updated 3 years ago
- alignment to variation graph inducer☆157Updated this week
- Structural variant toolkit for VCFs☆397Jan 23, 2026Updated last month
- SRF: Satellite Repeat Finder☆103Jan 8, 2024Updated 2 years ago
- ☆58Dec 12, 2023Updated 2 years ago
- ☆123Feb 22, 2026Updated last week
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆382Updated this week
- ☆41May 19, 2025Updated 9 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆106Jun 6, 2021Updated 4 years ago
- ☆67Apr 9, 2024Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Jan 29, 2026Updated last month
- Structural variant caller for real-time long-read sequencing data☆61Dec 1, 2022Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆84Feb 23, 2026Updated last week
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 5 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- Yet another Hi-C scaffolding tool☆172Nov 4, 2024Updated last year
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Simple pileup-based variant caller☆94Apr 25, 2025Updated 10 months ago
- Constructing a pangenome gene graph☆204Aug 11, 2025Updated 6 months ago
- Assembled Genomes Compressor☆178Nov 25, 2024Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆67Dec 2, 2022Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆122Oct 9, 2025Updated 4 months ago