Fast and accurate coordinate conversion between assemblies
☆118Sep 21, 2026Updated 2 weeks ago
Alternatives and similar repositories for leviosam2
Users that are interested in leviosam2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆76Aug 26, 2026Updated last month
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated last week
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆58Mar 7, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- ☆102Apr 22, 2024Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆267Aug 17, 2026Updated last month
- Deep learning framework for SV calling and genotyping☆116Nov 8, 2023Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆119Aug 21, 2026Updated last month
- ☆133Updated this week
- Structural variant toolkit for VCFs☆424Oct 3, 2026Updated last week
- vcfdist: Accurately benchmarking phased variant calls☆90Aug 28, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆116Jul 11, 2026Updated 3 months ago
- alignment to variation graph inducer☆165Jul 29, 2026Updated 2 months ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- Structural Variant Identification Method using Genome Assemblies☆147Sep 16, 2022Updated 4 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆421Aug 25, 2026Updated last month
- ☆68Apr 9, 2024Updated 2 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆392Oct 1, 2026Updated last week
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆59Dec 12, 2023Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 3 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- Improved Phased Assembler☆29Mar 11, 2022Updated 4 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- ☆42May 19, 2025Updated last year
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- Structural variant caller for real-time long-read sequencing data☆64Dec 1, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Yet another k-mer analyzer☆178Dec 30, 2025Updated 9 months ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- SRF: Satellite Repeat Finder☆110Jan 8, 2024Updated 2 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year