milkschen / leviosam2Links
Fast and accurate coordinate conversion between assemblies
☆118Updated 3 months ago
Alternatives and similar repositories for leviosam2
Users that are interested in leviosam2 are comparing it to the libraries listed below
Sorting:
- Wally: Visualization of aligned sequencing reads and contigs☆121Updated 4 months ago
- Toolkit for calling structural variants using short or long reads☆115Updated last week
- Copy number caller for long read data including SNV utilization☆68Updated 10 months ago
- Set of tools to manipulate and visualize modified base bam files☆59Updated 3 years ago
- ☆52Updated 4 months ago
- Phased assembly variant caller☆132Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆132Updated 2 months ago
- Simple pileup-based variant caller☆95Updated 9 months ago
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- ☆122Updated 2 weeks ago
- Same species annotation lift over pipeline.☆97Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 4 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- A local-haplotagging-based small and structural variant caller☆94Updated 3 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆120Updated 2 months ago
- Pipeline to convert a haploid assembly into diploid☆111Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆60Updated last year
- python plotly Circos from VCF☆40Updated last year
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Collection of tools for the analysis of CpG data☆105Updated 6 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 months ago
- A tool for somatic structural variant calling using long reads☆160Updated 3 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆119Updated 7 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆83Updated 3 years ago
- The Flexible Demultiplexer☆39Updated last month
- ☆101Updated last year
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Pangenome-based genome inference☆155Updated 2 months ago