milkschen / leviosam2Links
Fast and accurate coordinate conversion between assemblies
☆114Updated 3 months ago
Alternatives and similar repositories for leviosam2
Users that are interested in leviosam2 are comparing it to the libraries listed below
Sorting:
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 2 months ago
- Toolkit for calling structural variants using short or long reads☆105Updated last week
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- ☆48Updated 10 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆118Updated last month
- Same species annotation lift over pipeline.☆97Updated last year
- Pangenome-based genome inference☆129Updated 2 months ago
- ☆112Updated last month
- A tool for somatic structural variant calling using long reads☆134Updated last month
- Simple pileup-based variant caller☆90Updated 2 months ago
- Phased assembly variant caller☆119Updated 6 months ago
- Research release basecalling models and configurations☆113Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆104Updated 4 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated 2 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆110Updated last week
- A list of software for pangenomics☆117Updated last month
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆31Updated 3 months ago
- Collection of tools for the analysis of CpG data☆85Updated 4 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Somatic structural variant caller for long-read data☆69Updated 2 weeks ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- A complete diploid human genome☆121Updated 5 months ago
- A local-haplotagging-based small and structural variant caller☆78Updated last month
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- ☆40Updated this week
- accurate LiftOver tool for new genome assemblies☆129Updated 10 months ago