Alternatives and similar repositories for leviosam2

Users that are interested in leviosam2 are comparing it to the libraries listed below

• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆109Updated last month
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆119Updated 2 weeks ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆126Updated 2 months ago
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆68Updated 6 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆93Updated 6 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆57Updated 3 years ago
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆57Updated 2 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• twolinin / longphase
  ☆119Updated last week
• epi2me-labs / modbam2bed
  ☆50Updated last month
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated last month
• EichlerLab / pav
  Phased assembly variant caller
  ☆126Updated 10 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆147Updated last week
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆103Updated 4 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆113Updated 3 months ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆69Updated 4 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆136Updated last year
• comprna / RATTLE
  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
  ☆59Updated last year
• marbl / HG002
  A complete diploid human genome
  ☆135Updated last month
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆39Updated 2 years ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆48Updated 2 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆96Updated 3 months ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆122Updated last month
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆92Updated 5 years ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆86Updated last week
• genome-in-a-bottle / genome-stratifications
  Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…
  ☆82Updated 2 years ago
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆118Updated 3 months ago
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆40Updated last year
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆149Updated 2 months ago