A versatile pairwise aligner for genomic and spliced nucleotide sequences
☆59Jun 4, 2024Updated 2 years ago
Alternatives and similar repositories for mm2-fast
Users that are interested in mm2-fast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 3 months ago
- A tool for pangenome graph-based phased diploid genome inference.☆10Sep 19, 2026Updated last month
- ☆32Dec 16, 2022Updated 3 years ago
- Pangenome graph-based genome inference☆14Jul 24, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SRF: Satellite Repeat Finder☆110Jan 8, 2024Updated 2 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 5 months ago
- Error correction of long reads☆16Jan 30, 2026Updated 9 months ago
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- adaptive genome assembly using nanopore sequencing☆27Sep 11, 2026Updated last month
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆116Jul 11, 2026Updated 3 months ago
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 8 months ago
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- A genome completeness evaluation tool based on miniprot☆270Oct 7, 2026Updated 3 weeks ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆76Aug 26, 2026Updated 2 months ago
- ⛓ Correct misassemblies using linked AND long reads☆65Mar 24, 2026Updated 7 months ago
- Utilities to manipulate pangenome collections using multi-MUMs☆20Sep 16, 2026Updated last month
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆251Sep 16, 2026Updated last month
- ☆49Mar 19, 2023Updated 3 years ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆18Jan 24, 2026Updated 9 months ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 3 months ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- alignment to variation graph inducer☆165Jul 29, 2026Updated 3 months ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated 2 years ago
- Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph☆12Sep 11, 2025Updated last year
- A fast approximate aligner for long DNA sequences☆292Oct 11, 2024Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆422Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆255Dec 16, 2025Updated 10 months ago
- Efficient low-divergence mapping of long reads in minimizer space☆70Oct 7, 2023Updated 3 years ago
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated 2 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- Sequence-to-graph mapper and graph generator☆492Aug 11, 2025Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆140Sep 8, 2026Updated last month
- Pangenome-based genome inference☆184Updated this week