Alternatives and similar repositories for mm2-fast:

Users that are interested in mm2-fast are comparing it to the libraries listed below

• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 2 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆85Updated 9 months ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated 3 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆70Updated last month
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• sirselim / guppy_parameter_optimiser
  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
  ☆31Updated 2 years ago
• mourisl / centrifuger
  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
  ☆52Updated 2 weeks ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆48Updated 9 months ago
• daewoooo / SVbyEye
  ☆74Updated 3 months ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated 3 weeks ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆62Updated last month
• kjenike / panagram
  ☆61Updated last week
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆45Updated 11 months ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆56Updated last month
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆38Updated last month
• PacificBiosciences / jasmine
  Predict 5mC in PacBio HiFi reads
  ☆36Updated this week
• ablab / VerityMap
  ☆34Updated last year
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• MeHelmy / princess
  ☆79Updated 8 months ago
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆28Updated last year
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆54Updated 2 years ago
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆34Updated 9 months ago
• seryrzu / unialigner
  ☆64Updated 9 months ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆40Updated last week